Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1502g00006 ATGGAAGAACCACAACCTGGTTTTCGTTTCTATCCAACAGAAGAAGAGTTAGTTGGTTTCTATCTACACAACCAGCTAGAAGGAAAAAAGCAAGATGAAATCAATAGAGTCATCCCTGTCATTGATATCAATGGCAAAGAACCATGGACTCTTCCAACATTTGCAGGGGAACGGTGTCGTGGAGAAACGGAGCAATGGTTTTTCTTTTCGCCAAGACAAGAAAGAGAGATGAGAGGAGGAAGACCAAATAGGACAACATCTTGTGGGTACTGGAAAGCTACTGGCTCTCCTAGCTATGTTTACAATTCGAAGAACAAAGTGATTGGGATAAAGAAAACCATGGTGTTTTACCAAGGGAAAGCTCCTTATGGAAGGAAAACTAAATGGAAGATGCATGAATATAAGGCCATTGAACAATTTGACTCATCTAACACAAATCCTCCTAAGTTGCGACACGAATTCAGCTTGTGTCGAATTTATGTGATATCGGGAAGCTTTTGTTCATTCGATCGTCGACCATTAGAGAGACCAAGAGTGGAGTTACAGCTTGATCATAATGCTTCAACAAGTGCTCAACAAATGGTATCAGAGATTGATGAATCAAATCTGCATGCAACTTTCCATTCGGAAGGAGTAGGAAGAGATCATGATGATGTTTTTATGGGAGGGTCAAGTGGTACAAATTGGAATGAAGTAGCAAATAATGGGGTTGATGAATCTGAACCACTTTGGGAATGGGAACAACTAAATTGGATCTAA 759 0.4018 MEEPQPGFRFYPTEEELVGFYLHNQLEGKKQDEINRVIPVIDINGKEPWTLPTFAGERCRGETEQWFFFSPRQEREMRGGRPNRTTSCGYWKATGSPSYVYNSKNKVIGIKKTMVFYQGKAPYGRKTKWKMHEYKAIEQFDSSNTNPPKLRHEFSLCRIYVISGSFCSFDRRPLERPRVELQLDHNASTSAQQMVSEIDESNLHATFHSEGVGRDHDDVFMGGSSGTNWNEVANNGVDESEPLWEWEQLNWI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1502g00006 252 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Vivi1502g00006 252 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Vivi1502g00006 252 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 186 - -
Vivi1502g00006 252 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Vivi1502g00006 252 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1502g00006 2 251 NAC Transcription Factor Family AT5G22380 52.400 2.28e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1502g00006 NAM 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1502g00006 - - gmx:100784960 353.214