Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1497g00004 ATGAGTAATCCAGCTGAAACGGACATGGAAGATACCAAATCCTCTGTTACAGTGGTTGATAATGGCGACCAAGCTCTGTTTCGGTTTGCCGAGTTTTCCAAGAATGAGCTAGCATTGGATGAAAAAAGCTGCAAAGAAGCAGTGGATCTGTTCGGAGAAACCAAACATCTTCTCGTAGCAAATGTTTCATCAATGGGGAACGGAACGATTGAAGAAGCAGAACGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAAACTTACTCAGAAAAACGAGGAGAGTGGGAAGGAAGAGATTGAGAATACCGGTCTTACCTTGTGCCGAATATTGAGAGCGGCAAAGCTCAATATTGCAGAATTTTTCAAAGAACTTCCTCAATTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATCTATATGGCCCGGATTGGGAAAACAAGCTTGAGGCCAAGGAGATGCATGCCAATACTATTCACTTGAAGATTCTTAGCAAGTATTATAAGCGTGTATTTGAAGAGTTTTTTGTGTCAACTGATGCAAATGTTGAAAATAACTCGTCTGTTACCAATCATGTATCGAAGTATCATCGCTTTGGATGGTTACTTTTCCTGGCTCTTCGAGTACATGCTTTCAGTCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTGATTTCTATCTTGGCAATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAGTTTCAACATTCACGACTCTTCACGCTTTGTTAAGAAAAGTGACAAAGGCGTGGACCTCCTTGCTTCACTTTGCAACTTATACAACACTTCAGAAGACGAGTTGAGGAAAACCATTGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAAAAGAAACCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTCGACAGAGATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCCGTCTAATTTGAATGTGTTAGAAAATGATTACGATCACATGACTCGCAACAACGGTGAACTGGATGAAAGGTTATTCATCAACGAGGATGACAGTCTGCTAGCTTCAGGAAGTCTTACCGGTGGTTCTGTTTCAGCGGGAGGTGTAAAGAGGAAATTTGATCTGATGACATCACCTACTAAAACGATTGCAAGTCCACTTTCACCGCACCGTTCTCCTGCATCCCATGCTAACGGCATTCCAAGTAGTGCAAATTCAATGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGTACTGTCATTTCCCCACTTCCATCGAAGCCCTCACAAGAGCTGGAGCGATTCTTGACATCATGCGACAAGGATATTACAAGTGATGTAATACGCAGAGCACAGATTATATTGCAAGCAATATTTCCTAGTAGTCCCCTTGGTGACCGATGTGTAACCGGAAGCCTTCAAAGTGCTAACCTCATGGACAACATATGGGCGGAACAACGGAGATTAGAAGCACTGAAGTTATACTATAGGGTATTGGCAACAATGTGCAGAGCAGAAGCTCAGATACTCGGCAACAATCTAACTTCACTGCTTACTAATGAGAGGTTCCATAGGTGTATGCTTGCCTGTTCTGCAGAACTAGTCCTGGCTACTCACAAGACCGTAACGATGTTGTTCCCTGCTGTACTAGAGAGAACCGGAATCACAGCTTTTGATCTTAGCAAAGTGATAGAAAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAATTCATTGGAGGAGCGACTTTTGGAGAGCTTGGTATGGGAAAAAGGTTCTTCAATGTATAATTCATTGGCAGTCGCTAGACCCGCCCTTTCTGTGGACATTAATCGGCTTGGTCTGTTGGCTGAACCCATGCGATCATTAGACGAAATTGCAATGGATATTAACTTCTCTTGTGGAGGACTGCCTCCTGTGCCTTCCTTGCCAAAGCCTGAGCCTATGTCGGCTCAAAATGGGGATCCCAGATCACCAAAACGGCTCTGTACAGAACATCGAAATGTGTTGGTGGAGCGAAATTCTTTTACTTCACCAACAAAAGATCGGCTTCTTCACTTAAGCAACCTAAAGTCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCAAGTCCGACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGCGCAGAAACTGGTATCAGTGTCTTTTTCAGCAAGATTGTCAAGTTGGGAGCAGTCAGGATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAAAATGTATACTGTCTTTTCCAGCGAATCCTAAACCAATGGACGTCGCTCTTCTTCAACCGCCATATCGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCAAAGATATCGCAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCACAATGCAAACCACAAGTTTTTCGCAGCGTATTCGTTGACTGGTCATCTGCGCGCCGTAATGGATCATGCAAACAAAGAACAGGACAGGAGCACATCGATATCATTTCTTTTTACAATGAAGTTTTCATCCCATCTGTTAAGCCCTTGCTGGTTGAAATTGGCCCTGGCGGATCAACTACGAGAAGCGATCGAATACCTGAAGCGAACAACAAAAACGACGGCCAATTAGCTCAATGTCCAGGATCTCCTAGAATATCACCTTTCCCAAGCCTTCCTGATATGTCACCTAAAAAAGTGTCGGCAACACACAATGTCTACGTCTCACCATTAAGATCATCCAAGATGGATGCTCTAATTTCACATAGTTCGAAAAGCTATTACGCATGTGTCGGGGAGAGCACGCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATAAACAATCGACTAAACGGCGGCAACCGGAAAATAAGAGGACATCTCAATTTTGATGAAGTTGATGCTGGCTTAGTTAGCGACTCTATGGTAGCAAACAGCCTCTATCTACAAAACGGAAGTTCCGCATCATCATCAGGTGCACCATTGAAGACTGAGCAACCCGACTCTTGA 3084 0.4296 MSNPAETDMEDTKSSVTVVDNGDQALFRFAEFSKNELALDEKSCKEAVDLFGETKHLLVANVSSMGNGTIEEAERYWFAFILYSIKKLTQKNEESGKEEIENTGLTLCRILRAAKLNIAEFFKELPQFVVKAGPILSNLYGPDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANVENNSSVTNHVSKYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRSFNIHDSSRFVKKSDKGVDLLASLCNLYNTSEDELRKTIEQANNLVADILKKKPCLASECETENLENFDRDGLTYFKDLMEESSLPSNLNVLENDYDHMTRNNGELDERLFINEDDSLLASGSLTGGSVSAGGVKRKFDLMTSPTKTIASPLSPHRSPASHANGIPSSANSMIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVIRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLATMCRAEAQILGNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSVDINRLGLLAEPMRSLDEIAMDINFSCGGLPPVPSLPKPEPMSAQNGDPRSPKRLCTEHRNVLVERNSFTSPTKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGSCKQRTGQEHIDIISFYNEVFIPSVKPLLVEIGPGGSTTRSDRIPEANNKNDGQLAQCPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGGNRKIRGHLNFDEVDAGLVSDSMVANSLYLQNGSSASSSGAPLKTEQPDS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1497g00004 1027 MobiDBLite consensus disorder prediction 886 900 - -
Vivi1497g00004 1027 FunFam Retinoblastoma-related protein 1 691 907 - -
Vivi1497g00004 1027 Pfam Retinoblastoma-associated protein B domain 740 871 IPR002719 GO:0005634|GO:0051726
Vivi1497g00004 1027 MobiDBLite consensus disorder prediction 881 900 - -
Vivi1497g00004 1027 SUPERFAMILY Cyclin-like 424 618 IPR036915 -
Vivi1497g00004 1027 MobiDBLite consensus disorder prediction 656 678 - -
Vivi1497g00004 1027 Coils Coil 272 292 - -
Vivi1497g00004 1027 SMART DUF3452_2 88 234 IPR024599 -
Vivi1497g00004 1027 Pfam Retinoblastoma-associated protein A domain 416 616 IPR002720 GO:0005634|GO:0051726
Vivi1497g00004 1027 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Vivi1497g00004 1027 FunFam Retinoblastoma-related protein 1 419 606 - -
Vivi1497g00004 1027 SMART RB_A_2 416 616 IPR002720 GO:0005634|GO:0051726
Vivi1497g00004 1027 SUPERFAMILY Cyclin-like 738 913 IPR036915 -
Vivi1497g00004 1027 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 27 1025 IPR028309 GO:0006357|GO:0051726
Vivi1497g00004 1027 Gene3D - 696 895 - -
Vivi1497g00004 1027 Coils Coil 329 349 - -
Vivi1497g00004 1027 Gene3D - 193 353 - -
Vivi1497g00004 1027 FunFam Retinoblastoma-related protein 1 195 353 - -
Vivi1497g00004 1027 Gene3D - 419 606 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1497g00004 9 1027 Core Cell Cycle Gene Families AT3G12280 69.059 0.0 1395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vivi1497g00004 RB_A 1.6e-62 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1497g00004 K04681 - gmx:100779266 1677.92