Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1494g00001 ATGGTGTATCCAGTGATTGAGTATCCTGCAGAAGAAGAAGAAGAATCTGAAAAAGAGCAACAAGCTGAACAACATCATGCTGAAGAGATTCAAGTTCCTGTTGAAGAGGAACCAGTTGCTGAAAATCAGATGATTCAAGCTTCTGATATTCCTACCTCTTTTGTTGGTCCTTCTACTTCTGTGCTGATGAACACTCTGAAGGATCTTCAAGTGAACCAAGCTTCAGTGTTCAATCAGGTGAGTCGAAACCAATTAAACAAGTTACTGTTAACGAGAATTGCAGCAGGTACTTCCTCAAGCTTCATGAGTGTGACCATGAGTCAAAGCAACAGCCATGATGCCATTAACAATGACAACAACAAGCCAGATGATCATGCTCACGACATTGTGATGCCTGGGTTTCGTTTCCACCCAACTGAAGAAGAACTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTCGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGGGTTGGCAGCAATTGGTGAAAAGGAGTGGTACTTTTATGTGCCCCGAGATAGGAAGTATCGTAACGGTGATCGTCCAAATCGTGTTACACCTTCTGGGTATTGGAAAGCAACAGGAGCTGATAGGATGATTCGAACAGAGAACTTCCGTTCAATCGGGCTTAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATCCGAACAAGTTGGATAATGAACGAGCATCGTTTGCCTCAACATGAAACTCAAAGATTAAGTCACAAGGCTGAAATATCACTTTGCCGTGTTTACAAGAGAGCGGGTGTGGAAGACCATCCTCTTCCTCCCTCCATATCCTTCCCTCGTTGTCTCCCATCAAGCTCATCGTCAACAAGTTCATATTTGGACAAGAAACAACACCTGAACATGGCGTTTATGGGAATCAGTCATCTACAGCCACAGCCACAGGTAATTGATGATCATATAGTTTATAAAATTAATGAAAGCGACCCAACTGTTATTCCAGGGCTAGTAGCTCCCATAGATCAGCAAGTACAACCTGCAGATCCTTCTGTGTGTGGTATTTTCATCCCAACCAGCAGTGTTATGGCAGATGATGATCTAAACATACTAACAAGTTATCAACAACAAAGCTATCCAAATAAGTTTTCTACTTTGCTCATGCAATCACCTACTCTGCCTCTAAACTTGCTACCGAATTCGCTCACAACCATCTTCTCTGAGCGACAGTGGAAATGGAATAACTATAACCCTATCCCTGAGGCTGCAAACAGAGAGCACAGTACGTAA 1326 0.4321 MVYPVIEYPAEEEEESEKEQQAEQHHAEEIQVPVEEEPVAENQMIQASDIPTSFVGPSTSVLMNTLKDLQVNQASVFNQVSRNQLNKLLLTRIAAGTSSSFMSVTMSQSNSHDAINNDNNKPDDHAHDIVMPGFRFHPTEEELVEFYLRRKVEGKPFNVELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEHRLPQHETQRLSHKAEISLCRVYKRAGVEDHPLPPSISFPRCLPSSSSSTSSYLDKKQHLNMAFMGISHLQPQPQVIDDHIVYKINESDPTVIPGLVAPIDQQVQPADPSVCGIFIPTSSVMADDDLNILTSYQQQSYPNKFSTLLMQSPTLPLNLLPNSLTTIFSERQWKWNNYNPIPEAANREHST 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1494g00001 441 ProSiteProfiles NAC domain profile. 130 278 IPR003441 GO:0003677|GO:0006355
Vivi1494g00001 441 Pfam No apical meristem (NAM) protein 132 256 IPR003441 GO:0003677|GO:0006355
Vivi1494g00001 441 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1494g00001 441 FunFam NAC domain-containing protein 35 139 281 - -
Vivi1494g00001 441 Coils Coil 439 441 - -
Vivi1494g00001 441 Gene3D NAC domain 139 281 IPR036093 GO:0003677|GO:0006355
Vivi1494g00001 441 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 129 332 - -
Vivi1494g00001 441 SUPERFAMILY NAC domain 131 277 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1494g00001 126 330 NAC Transcription Factor Family AT2G17040 48.826 2.07e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1494g00001 NAM 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1494g00001 - - vvo:131641984 818.535