Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1493g00001 ATGGAGTTTTACGGTTCCACAAATTTATTTGATATTTCATGGGAAGATTTGTTTATGTTCGATAATTTTGATTCCAATTCTTCATCCTCTAGTGGTGATCATATGGATTTACAAGAATTCAAATCCAATATTAGAGAAGAAAATTCACCACCACCACCACAAACCCTAACTCAACAACAACCATCACTTCCCTCAAAAACCCTAACTCAACAACCACCATCATGTAAACGAGAGAAGAGGCTTTATAGAGGAGTAAGGACACGTCCATGGGGGAAATATGCAGCAGAGATAAGAGATACAACACGAAACGGTGTTCGAGTATGGATCGGAACATTCGATACACCTGAAGCAGCTGCTTTGGCTTATGATCAAGCAGCTTTCTTAACAAGAGGATATAGGGCAATCCTTAACTTCTCAGAACATGTTGTGAAGGAGTCTCTTCAAAACATGAACTTTAAGACATTGTTAAACCGGGGTTGTTCGCCTTTGTTGGAGTTAAAAAAGATGCATGTCTTGAGAACAAGATCTACTAAGACTTGTAGTAAAAAGGGTAAGAAGGTTTCAAAGAATGGAGGGTTGAATATGAATATTGCTGAAAATGTTTTGGTGTTGGAAGATATGGGGTCTGAGTATCTAGAGCAACTTTTGATGAGCACCATTTGA 663 0.3831 MEFYGSTNLFDISWEDLFMFDNFDSNSSSSSGDHMDLQEFKSNIREENSPPPPQTLTQQQPSLPSKTLTQQPPSCKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKTLLNRGCSPLLELKKMHVLRTRSTKTCSKKGKKVSKNGGLNMNIAENVLVLEDMGSEYLEQLLMSTI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1493g00001 220 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Vivi1493g00001 220 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Vivi1493g00001 220 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Vivi1493g00001 220 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Vivi1493g00001 220 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vivi1493g00001 220 PANTHER DNA-BINDING DOMAIN 42 215 IPR044808 GO:0003700|GO:0009873
Vivi1493g00001 220 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Vivi1493g00001 220 MobiDBLite consensus disorder prediction 44 81 - -
Vivi1493g00001 220 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Vivi1493g00001 220 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Vivi1493g00001 220 MobiDBLite consensus disorder prediction 44 74 - -
Vivi1493g00001 220 Pfam AP2 domain 82 127 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1493g00001 54 219 AP2-EREBP Transcription Factor Family AT3G23240 47.590 4.78e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1493g00001 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1493g00001 K14516 - gmx:100784784 165.236