LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1491g00001	ATGAAGTCAAGTGAGCACAAAAGTGAAACAATGTTGTTTGTTCTTGGTGGGATAGTAGTTGTCATCATAATATTGATTCTTTGTTGGATTGTCTTTAGAAAGCGTATTAAAGGATCAGACAAACCAGTTCCAAATGAAGCTGAGCCTACAGCTGCTACGAAGACGATATTTCCGTCGGTACAACACTCATCAGGGTCCATGGAGTTATATAGTATGAGCCTTAGGTCAATTAGCTACTTTGACTTCTACACTTTGAGAAAGGCAACCAATAACTTTTTTCATGGTAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGAAAGTTGGAAGATGGAAGGATGATAGCTGTTAAGGCATTGGCTCTTAACAAATCTCAACAGGGAGAAAGAGAATTTTTAGCAGAAGTTAAATTGATCACCAGTATGCAACACAAAAATTTGGTTCGTCTTCTCGGAAGTTGCATAGATGGACCTCAAAGGATACTTGTATACGAATACATGAAAAATCGAAGTTTAGACCTCTTCGTATATGGAAACAATGATCGATTTCTGAATTGGAGCACTAGGTTTCAAATTATACTCGGAGTAGCACGGGGATTACAATATCTTCACGAAGATTCGCACTTAAGAATCGTTCATCGTGATATCAAAGCAAGCAATATTCTTTTGGACGACAAATTTTTGCCAAGAATCGGAGATTTTGGACTAGCAAGGTTTTTCCCGGATGATCAAGCTTACCTTAGCACACAATTTGCAGGAACATTAGGCTATACAGCTCCTGAATATGCAATTAGAGGGGAATTATCAGTAAAAGCTGATACCTATAGTTTTGGAGTTCTTCTTCTTGAGATTATATGTTGCAGAAAAAACACAGATCATACTTTACCACCAGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATACGAGAAATCGAGTTTATTGGATCTTGTTGATCCAAAGCTGAAACAAGATGGATTTGTAGAGAAGGATGTTCTGCAAGCAACTCATGTGGCTCTCTTGTGCCTTCAGCCTCATGCACATTTGAGACCACCAATGTCAGAAATTGTGGCATTGTTGACATTCAAAATTGAAATGGTTACAACACCGATGAGGCCGGCGTTTCTTGATCGAAGGCCGAGGAAGGATGAAGATAACCATTCTTTTGAAGCTTCATTTGTCAAAGGATCATGA	1203	0.389	MKSSEHKSETMLFVLGGIVVVIIILILCWIVFRKRIKGSDKPVPNEAEPTAATKTIFPSVQHSSGSMELYSMSLRSISYFDFYTLRKATNNFFHGNLLGSGGFGPVYQGKLEDGRMIAVKALALNKSQQGEREFLAEVKLITSMQHKNLVRLLGSCIDGPQRILVYEYMKNRSLDLFVYGNNDRFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFLPRIGDFGLARFFPDDQAYLSTQFAGTLGYTAPEYAIRGELSVKADTYSFGVLLLEIICCRKNTDHTLPPEMQYLPEYAWKLYEKSSLLDLVDPKLKQDGFVEKDVLQATHVALLCLQPHAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRRPRKDEDNHSFEASFVKGS	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1491g00001	400	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	213	225	IPR008271	GO:0004672\|GO:0006468
	Vivi1491g00001	400	Gene3D	Transferase(Phosphotransferase) domain 1	169	372	-	-
	Vivi1491g00001	400	CDD	STKc_IRAK	98	364	-	-
	Vivi1491g00001	400	SMART	serkin_6	92	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1491g00001	400	Gene3D	Phosphorylase Kinase; domain 1	54	168	-	-
	Vivi1491g00001	400	ProSiteProfiles	Protein kinase domain profile.	92	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1491g00001	400	FunFam	Cysteine-rich receptor-like protein kinase 10	56	168	-	-
	Vivi1491g00001	400	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	15	390	-	-
	Vivi1491g00001	400	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	169	373	-	-
	Vivi1491g00001	400	SUPERFAMILY	Protein kinase-like (PK-like)	66	366	IPR011009	-
	Vivi1491g00001	400	Pfam	Protein tyrosine and serine/threonine kinase	96	361	IPR001245	GO:0004672\|GO:0006468
	Vivi1491g00001	400	MobiDBLite	consensus disorder prediction	380	400	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1491g00001	68	392	Receptor kinase-like Gene Family	AT1G56120	46.154	1.54e-97	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi1491g00001		PK_Tyr_Ser-Thr	8.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1491g00001	-		-	cam:101498319	600.127