Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1468g00002 ATGGCTTTCTTTCCATCAAATTTCATGCTTCAAACTTCTCATCAAGATGACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTATCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCCATGTCATTTTCAGGGATAGAGCTTGGAGAAGAAGCGAATGTCGAAGAAGAATTATCGGACGACGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGACTTCAACCAAGACAAATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTGTTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATTTCAACCAGGACAACACAAGGAGCTATTGATAGTCCTTTATCCACTCAACAACAAACAAGCATAAACCTCTTCCCATCTTCTTCTAGACCAACACTTGTTCCTCATCAACTCTTTCAAACCAATTCAACAAGACAAGACATGAACCAGTGCCAGAAGATTGATCACATGGTTAAAGAAGAGAGTTTGAGTAACATGTTTTCCGCCATTGATGAGCAATCTGGATTATGGCCGTGGTTGGAGCAACAGCATTTCAATTGA 864 0.4005 MAFFPSNFMLQTSHQDDHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSVKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTTQGAIDSPLSTQQQTSINLFPSSSRPTLVPHQLFQTNSTRQDMNQCQKIDHMVKEESLSNMFSAIDEQSGLWPWLEQQHFN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1468g00002 287 SUPERFAMILY Homeodomain-like 71 134 IPR009057 -
Vivi1468g00002 287 MobiDBLite consensus disorder prediction 173 219 - -
Vivi1468g00002 287 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Vivi1468g00002 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 253 IPR045224 GO:0003700
Vivi1468g00002 287 SMART HOX_1 75 136 IPR001356 GO:0003677
Vivi1468g00002 287 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Vivi1468g00002 287 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Vivi1468g00002 287 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Vivi1468g00002 287 Gene3D - 69 138 - -
Vivi1468g00002 287 Coils Coil 124 172 - -
Vivi1468g00002 287 CDD homeodomain 77 133 IPR001356 GO:0003677
Vivi1468g00002 287 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Vivi1468g00002 287 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Vivi1468g00002 287 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Vivi1468g00002 287 MobiDBLite consensus disorder prediction 180 219 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1468g00002 1 287 Homeobox Transcription Factor Family AT1G69780 62.416 1.42e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1468g00002 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1468g00002 K09338 - gmx:100801479 464.536