Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1458g00006 ATGGAGTTCTGGGGTGCTGAGGTTAAGGTTGGTGAATCTGTCAAGGTTGATCCACAAGAATTTGAAGCTTGCATTCATCTTTCTCAGGCTGCACTTGGTGAATCTAAGAAAGACAAAGCTAATGAGTCTGTTGTTATTTACTTGAAAGTTGGTGACCAGAAGCTTGTTTTGGGAACTCTTAACAGGGAGAAGATTCCTCAGACAACTCTTGAGTTGGTTCTGGACAAGGAGTTTGAGCTTTCTCACAGTTCTAAAACTTCCAGTGTCCATTTCTGTGGATACAAAGCTTACTACCCTGACAATGATAGTGAGGGAGAAGATGACTTTTCTGATAGTGATGAGGAGGAAATTCCTTTGGCCAAACCCATAGAAAATGGGAAACCAGAAACAAAGTCTGCAGACCAGACAGTTGCTGAAGCTAAGAAGGCTCCTGCCAAGATTGGGGCATCTGCTAAACAAGTGAAAGTCGTTGATCCTAAGGAGGAAAACGATGACGATTCTGATGATGAATCTGATGATGATCTTGATAGCTCTGATGAAGAGATGGGTGATGCTGATAGTGAAGATGAGGATGAGAGTGATGAAGAAGAGACTCCTGTGAAGAAGGTGGACCAGGGGAAGAAGAGGGCTAATGAATCTGCATCTAAAACCCCAGTTCCTTCCAAGAAGTCAAAAAATTCCACTCCTGAGAAAACTGATGGTAAGAAAGCTGTGCATACAGCAACTCCTCACCCCAAGAAAGGTGGAAAGACTCCAGGCAGTGAGGCCAAATCTCCCAAGTCTGGAGGACAACTCTCTTGCAGTAGCTGCAGCAAGACATTCAACTCTGAAACCGGACTTAGCCAGCATAGCAAGGCCAAACATGGTGCTCAGTAA 876 0.4429 MEFWGAEVKVGESVKVDPQEFEACIHLSQAALGESKKDKANESVVIYLKVGDQKLVLGTLNREKIPQTTLELVLDKEFELSHSSKTSSVHFCGYKAYYPDNDSEGEDDFSDSDEEEIPLAKPIENGKPETKSADQTVAEAKKAPAKIGASAKQVKVVDPKEENDDDSDDESDDDLDSSDEEMGDADSEDEDESDEEETPVKKVDQGKKRANESASKTPVPSKKSKNSTPEKTDGKKAVHTATPHPKKGGKTPGSEAKSPKSGGQLSCSSCSKTFNSETGLSQHSKAKHGAQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1458g00006 291 Gene3D Classic Zinc Finger 265 291 - -
Vivi1458g00006 291 MobiDBLite consensus disorder prediction 102 291 - -
Vivi1458g00006 291 MobiDBLite consensus disorder prediction 162 197 - -
Vivi1458g00006 291 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vivi1458g00006 291 MobiDBLite consensus disorder prediction 257 285 - -
Vivi1458g00006 291 MobiDBLite consensus disorder prediction 226 240 - -
Vivi1458g00006 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 291 IPR013087 -
Vivi1458g00006 291 ProSitePatterns Zinc finger C2H2 type domain signature. 267 288 IPR013087 -
Vivi1458g00006 291 Gene3D Nucleoplasmin core domain 1 101 - -
Vivi1458g00006 291 FunFam Histone deacetylase HDT1 1 100 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1458g00006 1 290 C2H2 Transcription Factor Family AT5G03740 38.941 3.33e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1458g00006 - - gmx:100795506 353.599