Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1458g00003 ATGGAAGAGGATGACAAGAACGCGGCAGCAAAGATGATCGGTACTTCCACTGCTGATCCTCAGAAAGAAGATGATGATGATATACTTCCGGAATCAACATTGGAGTCTTCACTCTTCAATCAAGTTCACATCAATGAAGAACCTTCTCAAACTGAAACTGCTGCTACTTCTTCCAAGAAAAGAAAACAAGTAGGTGGTGATGTAGCAATCAATAATTCTTCAACATTTCCATTGCCATTGGATTCTTCTCCCAACCTAACACCAAAGAAGAGAAAAGAGGGACCTTCTCTAACAACTTCTTCAGAAACTCCAGCCAAGAGGAGAAGAGGACGCCCTCCTGGTTCCAGATCAAAGAAGGAAAAAGAAGGACCTTCTCGAGCAACTTCAGAAACTCCAGCCAAGAGGAGAAGAGGACGCCCCCCTGGTTCCAGATCAAAGAAGAAAAAAGAAGGACCTTCCCGAATAGCTTCTGCAGAAACTCCAACCAAGAGAAAACGCGGCCGCCATTTTGGTACCGGTGGTGGAAAACTCGCCTCTCATATTATAGAGTTGAGTGCTGGCCAGGATGTGGTAGATGTTCTATACAAAATATCCGTGGAAAATCCTCGTAAAACAGTTACCATACTTTCTGCGCTCGGTTCTGTATCAGACATTGTCGATCTTACTCCCAAGGGTCTGAAGCACTGCAAGGGAGAATTTGAGTTATATTTTATGGCTATAAAATGTATCGTTGAAGATGATGGTTGTCACTGTCGTGACAAGGCAACTTTTGTTGTTGGATGCAAAGATGATAAGGGAAATTTGTTTGTAAATACTTCTGTCAATTCCCTCATAGCGGCCGGCCGTGTTGAAATTACTGCGACCTTATTCAACACATACAACGCTAAGAAAAGAGGTGCAAGAATTTTGGCGTTTGCTGGTGCTACTGCTCAAAAATGA 939 0.4313 MEEDDKNAAAKMIGTSTADPQKEDDDDILPESTLESSLFNQVHINEEPSQTETAATSSKKRKQVGGDVAINNSSTFPLPLDSSPNLTPKKRKEGPSLTTSSETPAKRRRGRPPGSRSKKEKEGPSRATSETPAKRRRGRPPGSRSKKKKEGPSRIASAETPTKRKRGRHFGTGGGKLASHIIELSAGQDVVDVLYKISVENPRKTVTILSALGSVSDIVDLTPKGLKHCKGEFELYFMAIKCIVEDDGCHCRDKATFVVGCKDDKGNLFVNTSVNSLIAAGRVEITATLFNTYNAKKRGARILAFAGATAQK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1458g00003 312 MobiDBLite consensus disorder prediction 67 82 - -
Vivi1458g00003 312 MobiDBLite consensus disorder prediction 104 137 - -
Vivi1458g00003 312 PRINTS AT-hook-like domain signature 132 143 IPR017956 GO:0003677
Vivi1458g00003 312 PRINTS AT-hook-like domain signature 161 171 IPR017956 GO:0003677
Vivi1458g00003 312 PRINTS AT-hook-like domain signature 106 116 IPR017956 GO:0003677
Vivi1458g00003 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 293 - -
Vivi1458g00003 312 Gene3D - 179 305 - -
Vivi1458g00003 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 179 290 IPR005175 -
Vivi1458g00003 312 MobiDBLite consensus disorder prediction 33 60 - -
Vivi1458g00003 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 296 IPR039605 GO:0003680
Vivi1458g00003 312 MobiDBLite consensus disorder prediction 1 174 - -
Vivi1458g00003 312 MobiDBLite consensus disorder prediction 145 166 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1458g00003 101 291 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 29.902 6.07e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1458g00003 - - vvo:131651066 565.844