Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1458g00001 ATGAGTAGTAGCAAGGTCTCCGACGACCACCTCTACACCGTCCGATCCATAGTCGGTTCGGAATTCACCGACATGGACATCATAAGAGCCCTACACATGGCCAAAAACGACGTCACTGCCGCCATCAACATTATCTTCGATACTAGCACCCCTAAATCCCAACCTACCCACGCCATCAATAAACGAAGGGTTTCTCCTCCAAAATCAACTCCTCCCACGGTCACATCCAGCTCCAAGCGCAATGCCGATGCAGAAAGCAAGAAATGTTCCGTCGAGTCTGGTTCTACTGACTGGTGGTTTATTGGCTCCGGTGAAGTGGCGGGGTTGTCCACGTGTAAAGGGAGGAACATAAAATCAGGCGATGGAGTGGTTTTCAAGTTTCCGGCTAAAAAGGTTTCTGTTTCGCCTTCTCCCGGTAAGGGTTTTGGACGGGCAGCGGCTTGTTCTGAGATAGTTCGATTTTCTAATGAACAAGATTGGGAGATTGGTAGAATACCGAATGAATGGGCTCGTTGTTTGTTGCCTCTGGTGCGCGATAATAAGGTTAAGGTTGAAGGGAAATGTGAATTTGCACCTAATGTTTTGGGCATCATGGATACTATCATTTTGTCAATCAGTGTATTCATCAATAGGTCAATGTTTGTTAAGCAACATCAGGTTTCTCTTAAGGATGCTGCAAATTCGACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTACGATTGCTTGGTCTTAGTCCTTTCAAGAAGGCAGAGTTAACTCCTGGTGATTTCTGTTCCAACAAGCGTCCTTTCAGTCAAACGATCACATCACTACATGCCAAGTCTGAGCGTCCTTTGCAAAATGGTCATGAGAATGAAACTGAAGATACTGTTTCCGAATTTGATCTTGAAAACATTGTTGGTGTTGCGTCAAGTTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTTTGTGATCTGCGACCCTATCAAAAACAAGCTCTTCATTGGATGATTCAGATGGAGAAAGGACGGCCAAGGGACGATACTACAACAACCCTTCATCCTTGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCCATGGGACTTGGAAAGACAGTAATGACCATATCCCTTCTCGTTGCCCATTCAGGAAGGGGTGGATTATTAGGCAGTCAACCCATAACCCAGCCATTTATTGAAGGTGGTGAAGTTAGTGATACTGGTACAATTCCCAATTCTGCAAACATTCCAAAAAAGGTAACCAAATTTACTGGTTTTGATAAACCAACCAAGCAAAGCAATTCTCTAACAAGTGGCGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCACGTGCGCCCTGGGTCCCTGTCTCTATATGTTCATTATGGGCAAAGTAGGCCCAAAGATGCCAAAAGTCTAGCTCAATGTGACGTTGTAATAACTACATACGGAGTTTTGGCTTCTGATTTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCAATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGTCAAGTTTCTATGGCTGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAAGATGTTTACAGTCTTCTTCGCTTTTTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGCGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATACTTGTTCTCCCTCCTGCTGATATGCAGATAATTTATTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAGGCCCTATTCAAAAGATCTAAGGTAAAGTTTGATCAATTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATTCTAGAGCTACTTTTACGTCTTCGGCAATGCTGTGACCATCCGTTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAAGAAACTAGCTAAGCGCTTCCTTAAAGGAACTTGTAATGCTTCAGAAGGTGAAGAAAAAGATGCACTCTCACGAGCTTATGTTCAAGAAGTTGTGGAGGAGCTGCGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTCGAAGCATTTGAAGATGCAGTGTTGACACCGTGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTATGTCTGGTTTATGTCCTGTTTGTAGGAAAACGGTCAGCAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGATATCGAGAAGAACTGGGTAGAGTCATGCAAGGTAACCGGTCTTTTGAATGAACTTGAAAATCTCCGCTCCTCAGGATCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTAATCGGAATAAAATATCATTTCTTCGTCTTGATGGGACATTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGTGACATACAGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTCGAGGAACAAGCCGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGTCAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAAAGAATGATTTCTGGTGCCTTGACGGATCAGGAGGTTCGATCTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 3024 0.4415 MSSSKVSDDHLYTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTSTPKSQPTHAINKRRVSPPKSTPPTVTSSSKRNADAESKKCSVESGSTDWWFIGSGEVAGLSTCKGRNIKSGDGVVFKFPAKKVSVSPSPGKGFGRAAACSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVKVEGKCEFAPNVLGIMDTIILSISVFINRSMFVKQHQVSLKDAANSTDESVFHPLPALLRLLGLSPFKKAELTPGDFCSNKRPFSQTITSLHAKSERPLQNGHENETEDTVSEFDLENIVGVASSSELEEMDPPENLLCDLRPYQKQALHWMIQMEKGRPRDDTTTTLHPCWEAYRLADKRELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTISLLVAHSGRGGLLGSQPITQPFIEGGEVSDTGTIPNSANIPKKVTKFTGFDKPTKQSNSLTSGGNLIICPMTLLGQWKAEIETHVRPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGVLASDFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLKKLAKRFLKGTCNASEGEEKDALSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSMSGLCPVCRKTVSKQDLITAPTESRFQVDIEKNWVESCKVTGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFNRNKISFLRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGSVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1458g00001 1007 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 92 1007 - -
Vivi1458g00001 1007 Pfam HIRAN domain 101 205 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi1458g00001 1007 SUPERFAMILY RING/U-box 759 818 - -
Vivi1458g00001 1007 Gene3D - 654 1007 IPR027417 -
Vivi1458g00001 1007 Pfam Zinc finger, C3HC4 type (RING finger) 769 817 - -
Vivi1458g00001 1007 MobiDBLite consensus disorder prediction 51 88 - -
Vivi1458g00001 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 1001 IPR027417 -
Vivi1458g00001 1007 SMART HIRAN_2 101 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi1458g00001 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 638 IPR027417 -
Vivi1458g00001 1007 SMART ring_2 772 811 IPR001841 -
Vivi1458g00001 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 823 IPR013083 -
Vivi1458g00001 1007 MobiDBLite consensus disorder prediction 66 80 - -
Vivi1458g00001 1007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 842 1007 IPR001650 -
Vivi1458g00001 1007 SMART ultradead3 319 622 IPR014001 -
Vivi1458g00001 1007 ProSitePatterns Zinc finger RING-type signature. 787 796 IPR017907 -
Vivi1458g00001 1007 FunFam DNA repair protein RAD5B 378 639 - -
Vivi1458g00001 1007 Pfam SNF2-related domain 326 716 IPR000330 GO:0005524|GO:0140658
Vivi1458g00001 1007 ProSiteProfiles Zinc finger RING-type profile. 772 812 IPR001841 -
Vivi1458g00001 1007 CDD SF2_C_SNF 838 965 - -
Vivi1458g00001 1007 CDD DEXDc_SHPRH-like 323 638 - -
Vivi1458g00001 1007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 381 600 IPR014001 -
Vivi1458g00001 1007 SMART helicmild6 871 954 IPR001650 -
Vivi1458g00001 1007 Pfam Helicase conserved C-terminal domain 846 954 IPR001650 -
Vivi1458g00001 1007 Gene3D - 380 650 IPR038718 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1458g00001 4 1007 RAD5 or RAD16-like Gene Family AT5G22750 69.864 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1458g00001 SNF2_N 1.6e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1458g00001 K15505 - gmx:100794558 1676.76