Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1454g00006 ATGGCCGATCCCGTCACGGAACTCAGTCCCTCCGGCACCACCGCCACACCGCCGGCCCGCAATGTCCGCCGGAGGTTGGTCCAATCAACGCTCTTCCCTCACAAGCCTGCAGTGCCTCGCAACAAACCCGAGGAGAATGGCGACAGTTGTGACGAACAAGACGAGGATTACTGCGAGACGAAGAATCGCAGGAAGAGAAAGTCTAAAGGGAAGGTCACTCCCGCAAATAAAAGCTCCAAGAGTGCCACACCAAAGAAGAATGCATCAGCTAATGGAATTACCGGGTCAACTTCGAGGAATGTTTTGTCTGATTTCGATAAAGTTGGTAAAGCTAAGCCTGATTTGCGGTTAGAGGCAAAGTTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGCCGACAAGTTCATCCATTTTTTTCATCATGTAAAGCTGGGAAGAAAGTTCAGGAGCTGTCTGAATCAGGAAGTGATCTATTCAAAGCTAAGAGTGGGGATGAAAGGATTACCTGTGGTCCTATTCATGTATTTGAAAATATCAAGGATGATACCTCATCAGTAGACTGGAGAAACTGGACATTTTTGAGAAATTCCACCCATGTGAATGGAGGATTAGAAAATTCAAATTCTTCTGTTTATGAGGGTTCTGTTGAATGCTTAAATTTTGATAAGCTTCTTAGTAACTTACATCCATTGGGGGCTTCAAGCTTTCATTCTCAATGTCCAGAAAATCTGCAAGAAACATCATTATCAAACTCAACTTTACAAGAGGAGCAACCAAAAAGTGCTCAAATGCCAAAAAATGCCAAAGTGGACTTGGAGGTGGGTGAATCTGATACCTTTTCTGTGCTAGCTGGCTATTTTAGAAAGTCGTGTACTGAGCCGTCTAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATGCTGGTTGTGAGGATAAACCAGAAGGTAGCTTATGGGCATACAAATACAAGCCAACGAAGGCTGTTGAGGTATGCGGTAATGATGTATCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAATCCCAGGAAGGAGACATCTAATAGGGATTCAAGGGTCATGCAAGATGATGATGATTATATCTGTTCTGACAGTGACTATGATTCAGAAGATATGAACGAAGAGGACTCTCTGCAGAATGTTCTTTTAATTACAGGACCAACAGGGAGTGGCAAGTCTGCAGCAGTCTATGCCTGTGCCAAAGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGAACTGTTGTAAAGCAGTATTTTGGAGATGCCCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACATACTTCGAGATCACAGAAGATAACTACAAATTTCCCCACAGCTCCTGCTTTGATTAATAATAAAGCTGCGGATGAGGTGAATGACGGAGTAGTTGAACTAATAACCTTATCTGATGATGAAGCTCGTAGCCCATGTAAAACATCCCAAAAGTTACTTGGCAAGAGTGAAGCTGTTGCATGTGATAAAGTCCAGACTCTGATTCTGGTTGAGGATGTGGACATACTCTTTCCTGAAGACCGTGGATGTATTGCCGCAATACAGCAGATTGCTGAGACAGCAAGGGGTCCAATTATATTGACCAGCAATAGTGATAACCCTGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCATTCTCATTGCCAACGCCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCGGAGAAGGAGCCCCCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCCTGTGATGGAGACATCCGGAAGACCATTATGCATCTTCAGTTTTGGTTGCAGAGTAAAATATTCAGTAAAGATCTAAAAGCACAGGCAAGCTATCCCTCACTTCCATTTGATCTTGAGGGTGTTCATCAGATACTACCAAAGATAATGCCGTGGGATTTCCCTTCAGAGATATCCGAACTAATTGAGAATGAATTTGTCAAATCAGTAAATATAATGGAAGAGAATTGCAGCATGCAAGGGTTAGTTGAAGAAGAGCTTCTTCAAATAAATGAAAGCCAAAATGATTCAGACGAGCAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTAAGAGAAATGGGTCTGTAACAGATTACGGCGAGCTTGAAATTCAATACAATGCTATTTCTGAGTTTCCTAATTCTTCTGAATCTCCTGAAGCATCCTATCTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGAGGAGGATTCAAATAACCGATATCCTCAAGACACAGAGGATGACGCTAACAAGAGACATTCCATCAAAGAAAATAATGAATGTACCTCTGAGATTCAGTTGAATGAGAACTGCCCCAGCACATCTTTTCGTAAGCTGGTCTGTTCTGAATTGGAGGATTCAGATGAGGAGCGTGATAAATATTCAAAAACAGCTGATGTTAAATGCATAAATGAGACATCTAAGTCATTTGATATATCCTGTGTACCAGAATCATCGATTGTTCCTGAAACTGCTATTGAAAGCGGAACAGATACAATATCTGGAGCGGTGTCTTCTCGTCACTGTCTAGAAGTTTCTATGAATAATGAGTCAAAACCGTTCACTCTATGTGCTCGGAGGCGGTTAACAAAATTATCACACAATTCAGATATTATGTTGACAGATGCTGAAATTCCAGATTCTTCTCCAAAAGAGGCTCTACAAGATTTTCTAGATGAAAATATGGAAACTACAATTAATAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAATTAAAGTCAACATTTGTTGAGTCGAGTCCATTATTGGAGACAGATATGGTACAAAGTTTATGGAAAAAGCTCCGACAAATGGATTTAAGACAGCATACTATCTCAGAACAGCTAGAGGCTTCTCAAGTTGTTAAACTTGCTAATGGGTTGAGCAATCTAATTTCAGAAGCTGATTTGTTTCACAATTACCAACATAAACAAGATATTTTGGAGCCCCAGAGCTTTGTTTCTAATGAAGCTACAACTAGTTGTTATAATGACGAAACAATGATGTCCACAGTTGCTGTACATGGGTTTTGTTCTTATGTTAAACTTATAGCAGATGTTGGATCAAAGTTGGGTTGTGCGAAGATGATTGATTTAGCTTCTGAGATGCTGGCTTCCACAACTGATACAATGACATTGGGGAAATTATCCAGACATGATCTTGCCAAAAGCACTGTTATTTATAATGGGAAGGAATTAGAGTTGAACAACCCCATAAGTAATGTGAAGAAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGAAAGAATATCCTTAGCAGCACTGAAAGGTGATATCTTCTATGAATATCTATCTTCATTGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCACAATGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTTTTCAACATTATTTGAGCAGATGTACAATGTTGTCCCCCGAAGCTATAACGTTGGTCAGTGATGGTGATTTGTTCAAAAAGATTTCTTCACAATATACAACTAATGTGGAAAGTACACTATTATAG 3651 0.4051 MADPVTELSPSGTTATPPARNVRRRLVQSTLFPHKPAVPRNKPEENGDSCDEQDEDYCETKNRRKRKSKGKVTPANKSSKSATPKKNASANGITGSTSRNVLSDFDKVGKAKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSESGSDLFKAKSGDERITCGPIHVFENIKDDTSSVDWRNWTFLRNSTHVNGGLENSNSSVYEGSVECLNFDKLLSNLHPLGASSFHSQCPENLQETSLSNSTLQEEQPKSAQMPKNAKVDLEVGESDTFSVLAGYFRKSCTEPSSRFLQESLRSYYAGCEDKPEGSLWAYKYKPTKAVEVCGNDVSVNFLSDWLHQWHERRYNPRKETSNRDSRVMQDDDDYICSDSDYDSEDMNEEDSLQNVLLITGPTGSGKSAAVYACAKEQGFDILELNASDCRNGTVVKQYFGDALGSHGFKRLSEHTSRSQKITTNFPTAPALINNKAADEVNDGVVELITLSDDEARSPCKTSQKLLGKSEAVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLHVSFSLPTPKELLCHLYSVCLGEGAPIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFSKDLKAQASYPSLPFDLEGVHQILPKIMPWDFPSEISELIENEFVKSVNIMEENCSMQGLVEEELLQINESQNDSDEQYMETDYIKAKKVEMIKRNGSVTDYGELEIQYNAISEFPNSSESPEASYLQNGRRKLVVMSSDSEEEDSNNRYPQDTEDDANKRHSIKENNECTSEIQLNENCPSTSFRKLVCSELEDSDEERDKYSKTADVKCINETSKSFDISCVPESSIVPETAIESGTDTISGAVSSRHCLEVSMNNESKPFTLCARRRLTKLSHNSDIMLTDAEIPDSSPKEALQDFLDENMETTINKVMDECSRVDFKLKSTFVESSPLLETDMVQSLWKKLRQMDLRQHTISEQLEASQVVKLANGLSNLISEADLFHNYQHKQDILEPQSFVSNEATTSCYNDETMMSTVAVHGFCSYVKLIADVGSKLGCAKMIDLASEMLASTTDTMTLGKLSRHDLAKSTVIYNGKELELNNPISNVKKSENKASLFEVVQSIVPERISLAALKGDIFYEYLSSLRQISRSEAVRVSQCVEKKRRGRSRGFQHYLSRCTMLSPEAITLVSDGDLFKKISSQYTTNVESTLL 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1454g00006 1216 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 1205 IPR004582 GO:0006281
Vivi1454g00006 1216 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 577 638 - -
Vivi1454g00006 1216 Gene3D - 316 569 IPR027417 -
Vivi1454g00006 1216 Gene3D - 575 637 - -
Vivi1454g00006 1216 MobiDBLite consensus disorder prediction 1 100 - -
Vivi1454g00006 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 623 IPR027417 -
Vivi1454g00006 1216 MobiDBLite consensus disorder prediction 247 262 - -
Vivi1454g00006 1216 MobiDBLite consensus disorder prediction 74 100 - -
Vivi1454g00006 1216 SMART AAA_5 391 580 IPR003593 GO:0016887
Vivi1454g00006 1216 MobiDBLite consensus disorder prediction 247 267 - -
Vivi1454g00006 1216 MobiDBLite consensus disorder prediction 764 789 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1454g00006 319 620 Core DNA Replication Machinery Family AT5G22010 21.975 9.59e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1454g00006 K26118 - gmx:100784209 1516.52