Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1450g00001 ATGAATAGCAGCGGTGGCAGTAATGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGATGATGATGGGTTTCAATAAATCATCACCTTTTACAGTTTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTCAAGTATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTCGTTCTTCCCTTTCACTCTCACAATTTCTTTCACCATTCTATTCCTACCCTGAGTTATTGTTCCTTCTATGGAAAAAAGGTGGACCCGGAACCAGGACGATGTAGGAGGACCGATGGAAAAAAATGGAGGTGCTCTAAGGAAGCATACCCTGACTCCAAATACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACCAACAACTCTTGTCGCTGCTCCCACCACTACACCTCCAAACTTCCACAACCTTCCCACCACAAATGCCTATGCTACTCTTCAAAATGATTCTCATCTTGATACCATTCCCTATGGGATTCCAAGTAAACAATACAGGTATGTTCAAGATCTTAAATCTGAGGGTGGAAAACATAGCTGCTTTGCAGAAGCTTCAGGTGGAGGCCACAAGTGTCTCCAAATGGAGTCTCAGCTAGAAAACTCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTTTTCTGCATCAAAATCAAGTAATAATCCCATGTTGCAGAGTGATTATCCCCAGCATTCGTTTTTATCAACTGAATATGGATCTGGAGAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGATCCTTTTTCAATGAATGGCCTAAGAGCAGAGAGTCATGGTCTGGTTTGGAAGATGAAAGGTCCAACCAAACAGCCTTCTCCACTACTCAACTCTCAATATCCATTCCCATGTCATCTTCTAACTTCTCTGCCACAAGCTCTCAGTCGCCACACGATAACTAG 945 0.455 MNSSGGSNGGGGGGGGGGGMMMGFNKSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPFHSHNFFHHSIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESPTTLVAAPTTTPPNFHNLPTTNAYATLQNDSHLDTIPYGIPSKQYRYVQDLKSEGGKHSCFAEASGGGHKCLQMESQLENSWPLMSTRVSSFSASKSSNNPMLQSDYPQHSFLSTEYGSGEAVKEEGQPLRSFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSNFSATSSQSPHDN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1450g00001 314 ProSiteProfiles WRC domain profile. 86 130 IPR014977 -
Vivi1450g00001 314 MobiDBLite consensus disorder prediction 127 144 - -
Vivi1450g00001 314 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1450g00001 314 ProSiteProfiles QLQ domain profile. 29 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1450g00001 314 SMART QLQ_2 28 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1450g00001 314 MobiDBLite consensus disorder prediction 118 144 - -
Vivi1450g00001 314 MobiDBLite consensus disorder prediction 274 293 - -
Vivi1450g00001 314 PANTHER GROWTH-REGULATING FACTOR 5 20 302 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi1450g00001 314 Pfam WRC 87 129 IPR014977 -
Vivi1450g00001 314 MobiDBLite consensus disorder prediction 279 293 - -
Vivi1450g00001 314 Pfam QLQ 29 61 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1450g00001 29 129 GRF Transcription Factor Family AT3G13960 61.468 1.06e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi1450g00001 WRC 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1450g00001 - - vvo:131606650 592.423