Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1443g00006 ATGGCTTTGCTTGCACCAGGTGTTGGATTTATCCCTACCGATGAGACTCTTGTTGGCTATTACTTGGTTAACAAGAATAGTCAAGAGCTTCAAGTTTTCATTGGCTGTGACCTCATCAAGGAGGTGAACTTGTATGCTCATGATCCTTTTGAATTGCGTTTTCCGTCGTCCTATACTATCCAGTCTCAGAGGCAGTTCTTCTGCTTTACTGCTAAAGTTGAGGAGGAGGTGAGACACTGCAATACTGGGTTCTGGATGAAGAAGGGAACTCCCTGCGAAATTACCGGTGCTGGTAATGTTGTCTTGGGTACCAAAACTCTGTTTATTTTTTATCTCGGATGTTCCCCGAATGCTGCTACCAGAACTGATTGGGTGATGTACGAGTATACCTTGGCTAACAAGCCTCAGGCTCCGTTTGTTGTGTGTCGTATCTTTGAGTGCCCTCGAGGAATGGATCTGGATTCTGAATTCGGGCCCATATCTGAAGTTGTAGTTGATGCGGGTGAAGACGTCGGGATGATTGAAGTCGAGCAGAATCTCGAGAGGGGTGCTGCTGTGCTAAGGATGAATGAAGAGGCTGATGCTGCAGGGCCAAGCAATCAGAATGAGAAGTGCGTTACTCTTATCATCAACATTACGTTGTACCTGGATGATGTGACTACAGCACTTGATCGTGCTATAATGGAAGGAGATTTTATTGAGTTGGCTGATCTTTCTTAG 720 0.4542 MALLAPGVGFIPTDETLVGYYLVNKNSQELQVFIGCDLIKEVNLYAHDPFELRFPSSYTIQSQRQFFCFTAKVEEEVRHCNTGFWMKKGTPCEITGAGNVVLGTKTLFIFYLGCSPNAATRTDWVMYEYTLANKPQAPFVVCRIFECPRGMDLDSEFGPISEVVVDAGEDVGMIEVEQNLERGAAVLRMNEEADAAGPSNQNEKCVTLIINITLYLDDVTTALDRAIMEGDFIELADLS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1443g00006 239 ProSiteProfiles NAC domain profile. 4 147 IPR003441 GO:0003677|GO:0006355
Vivi1443g00006 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 181 - -
Vivi1443g00006 239 Gene3D NAC domain 13 149 IPR036093 GO:0003677|GO:0006355
Vivi1443g00006 239 Pfam No apical meristem (NAM) protein 6 131 IPR003441 GO:0003677|GO:0006355
Vivi1443g00006 239 SUPERFAMILY NAC domain 3 145 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1443g00006 1 144 NAC Transcription Factor Family AT2G27300 33.113 3.45e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1443g00006 NAM 8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1443g00006 - - vvo:131641773 489.189