Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1443g00004 ATGGCTGCTTTTCTTCCACTTGGTGTTGTTTTCATTCCTAATGATGAGATTCTTATTGGCTATTACCTTGCCAACAAAAATAAGGAAGATCTCCATATTTTCAATGGCTCACACATGATTAAAGAGATGACCCTATATGACTCTGATCCCTTCGAATTGTCTCCCGCGTCATCCTATTCAATCTACAATGGTAGGCACTGGCACTGGTATTGTTTTACTACAAAAATTAACGAGGAAAGAAGACATTGCAAGACCGGGTTTTGGAAGAAGAAAGGAAATGTTCAAAGAACTAATTGGGCTATGTATGAATATGCTTTGGTAGACAATACGCAGGCTGGTTTTGTTCTTTCTAGAATATTTGATTGCCCCATAGAGATGGACGTGGATGATGAATTTGGGCCTTTATCTGATGTTGATGAAACTGATTGTGATGAAAGTGATAACGTGCTTGAGAAATTCGACGTATGA 468 0.3846 MAAFLPLGVVFIPNDEILIGYYLANKNKEDLHIFNGSHMIKEMTLYDSDPFELSPASSYSIYNGRHWHWYCFTTKINEERRHCKTGFWKKKGNVQRTNWAMYEYALVDNTQAGFVLSRIFDCPIEMDVDDEFGPLSDVDETDCDESDNVLEKFDV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1443g00004 155 Gene3D NAC domain 14 96 IPR036093 GO:0003677|GO:0006355
Vivi1443g00004 155 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 93 - -
Vivi1443g00004 155 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vivi1443g00004 155 Pfam No apical meristem (NAM) protein 6 94 IPR003441 GO:0003677|GO:0006355
Vivi1443g00004 155 SUPERFAMILY NAC domain 3 120 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1443g00004 1 154 NAC Transcription Factor Family AT1G32510 29.224 1.97e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1443g00004 NAM 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1443g00004 - - vvo:131638861 283.493