Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1443g00003 ATGGCTGCTTTTCTTCCACCTGGTGTTGTTTTCATTCCTAATGATGAGATTCTTATTGGCTATTACCTTGTCAACAAAAATGACGAAGACCTTCATATTTTCAATGGCTCTCACATGATTAAAGAGATGAACCTATATGACTTTGATCCCTTCGAATTGTCCCCCGCGTCATCCTATTCAATCTACAATGATAGCGTAGTTTTAGGAACTAAAACTCTCTTTGTTTTCTATCTTGGAAAATCCCCAAATGATTCAAAAAGAACTAATTGGACTATGTATGAATATGCTTTGGCAGATAATCCGCAGGCTCATTTTGTTCTTTGTAGAGTATTTGATTGTCCAATAGATATGGACGTGGATAATGAGTTTGGGCCTAGATCTGATGTTGATGAAATTCATTGTGATGAAAGTGATAATGAACTTGAGAAATTCGGCATATGA 441 0.3605 MAAFLPPGVVFIPNDEILIGYYLVNKNDEDLHIFNGSHMIKEMNLYDFDPFELSPASSYSIYNDSVVLGTKTLFVFYLGKSPNDSKRTNWTMYEYALADNPQAHFVLCRVFDCPIDMDVDNEFGPRSDVDEIHCDESDNELEKFGI 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1443g00003 146 ProSiteProfiles NAC domain profile. 1 113 IPR003441 GO:0003677|GO:0006355
Vivi1443g00003 146 Gene3D NAC domain 54 114 IPR036093 GO:0003677|GO:0006355
Vivi1443g00003 146 Pfam No apical meristem (NAM) protein 6 54 IPR003441 GO:0003677|GO:0006355
Vivi1443g00003 146 SUPERFAMILY NAC domain 3 111 IPR036093 GO:0003677|GO:0006355
Vivi1443g00003 146 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 61 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1443g00003 1 141 NAC Transcription Factor Family AT1G32510 28.169 1.06e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1443g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1443g00003 - - vvo:131638861 252.292