Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1443g00002 ATGGCTGCTTTTCTGCCACCTGGTGTTGTTTTCATTCCTAATGATGAGATTCTTATTGGCTATTACCTTGCCAACAAAAATAACGAAGAGCTCCATATTTTCAATGGCTCACACATGATTAAAGATATGAACCTATATGACTCTGATCCCTTCGAATTGTCTCCAGCGTCATCCCATTCAATCTACAATGGTAGGCATTGGCACTGGTATTGTTTTACTTCAAAAATTAACAACGAAAGAAGACATTGCAAGAACGGATTTTGGAAGAAGAAAGGAAATGTTCGTAACATTACTAATGCAGATAACGTCGTTTTAGGAACTAAAACTCTCTTTGTTTTCTATCTTGGAAAATCTCCAAATGATTTAGAAAGAACTAATTGGACTATGTATGAATATGCTTTGGCAGACAATCCTCAGGCTCGTTTTGTTCTTTGTAGAGTATTTGAATGCCCAATAGAGATGGACGTGGATAATGAGTTTGGGCCTATATCTGATGTTGATGAGACTGATTGTGATGCAAGTGATAATGAGCTATAG 537 0.3687 MAAFLPPGVVFIPNDEILIGYYLANKNNEELHIFNGSHMIKDMNLYDSDPFELSPASSHSIYNGRHWHWYCFTSKINNERRHCKNGFWKKKGNVRNITNADNVVLGTKTLFVFYLGKSPNDLERTNWTMYEYALADNPQARFVLCRVFECPIEMDVDNEFGPISDVDETDCDASDNEL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1443g00002 178 Gene3D NAC domain 14 152 IPR036093 GO:0003677|GO:0006355
Vivi1443g00002 178 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Vivi1443g00002 178 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 149 - -
Vivi1443g00002 178 SUPERFAMILY NAC domain 3 148 IPR036093 GO:0003677|GO:0006355
Vivi1443g00002 178 Pfam No apical meristem (NAM) protein 6 134 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1443g00002 1 178 NAC Transcription Factor Family AT1G32510 33.796 8.61e-23 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1443g00002 NAM 4.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1443g00002 - - vvo:131638861 346.28