Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1427g00005 ATGAGTGAGAGAGAAGAGTTTGAGGTAGATGGAAAAAAGGGTCCTTTGGATTGGAGGTTTGTGAGTGGTAACCTTGTAAATTCATCAGTGGGTTTGGTTTCCTTGGAAAATTCTATGATGGGTTTTTCTCCTTCATGTTCTAATTCAATGGTGGATTCATATGGTCCTAACTTTTTGGACCTTGCATCCAATTCTGAAAGCTTTGGTTTTTGTGATGTTAATGGCCACAGTAATGGAATGGGAAAAGATGGGTTTAGTGATGATAGAACACTAGGATTTGGCTGGAACCTTGCTGGTTCTGTGATGAATAAGGGTGGTGAGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGGATTTACTGATGCTGCACGAATGTCGTGCTTAAGTGCCGGGGGTTTTGGAGATACGGTTAACTCGTGTAGAGTTCCTCAATCAATGGCTCTACATGTTCCTCAATCTATTGAGCATCTTGGTAGTGATGGAAGAAGTGATTGTCCTGTAATGTCTCCAGAGGAAGGGAAACAAGCACTTGGAGGGTCTTGTAATGAAGCTGATAGAGTCGAATCAAGGGGTGAGGGTGATGATGGTGTTGCCGTTGGTAGCCATGATGGTTCCCAAATGTTGGATTGTACAAGTGGAGAACCGTCTATTAAAGGTCTAAACCGAAAGAAAAGGAAAGGAAGTAGGCAGGATGGTGAGTGCGACAAAGCCACCCGAACTATTGAGCTGCCTAGGGAAACTGCAAAGGACAACTGTAAGAGTCGACAGAAGGGAGAGAAGGAACCAATTTCAACAACCAAGGATTCTGGGAAGAATGCTAAACAGGGTTCTCAAGCTTCTGATCTGCCTAACGAGGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCGACAAACAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGATCACTGGCAAGGCATTGATGCTAGATGAAATCATAAACTATGTACAGTCTCTTCAGCAACAAGTTGAGTTTTTATCAATGAAACTTGCAACAGTGAATTCGCACGTGGATTTTAATATGGAACGGCTACTTCCTAAAGACATTCTTCAACATCGACATGTTCCATCGTCATCTGCACCGGGGTTTCTAACAGAAATGCCAATGACTTTTCCTCCATTATTACATCCATCTCAACCAGGACTGATTCGTTCGTCTCCACCTAACATGGCTAATCCATCCGATATACTTGGGCGGAGCGTGGAACCACAATTCACACCCTTGACTGGAGAATTTAAAGAGCCAGATCAGGTTAATCCATTGCAAGAAGCCAAACACTGA 1371 0.434 MSEREEFEVDGKKGPLDWRFVSGNLVNSSVGLVSLENSMMGFSPSCSNSMVDSYGPNFLDLASNSESFGFCDVNGHSNGMGKDGFSDDRTLGFGWNLAGSVMNKGGEMFPQSLSQFPTDSGFTDAARMSCLSAGGFGDTVNSCRVPQSMALHVPQSIEHLGSDGRSDCPVMSPEEGKQALGGSCNEADRVESRGEGDDGVAVGSHDGSQMLDCTSGEPSIKGLNRKKRKGSRQDGECDKATRTIELPRETAKDNCKSRQKGEKEPISTTKDSGKNAKQGSQASDLPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKITGKALMLDEIINYVQSLQQQVEFLSMKLATVNSHVDFNMERLLPKDILQHRHVPSSSAPGFLTEMPMTFPPLLHPSQPGLIRSSPPNMANPSDILGRSVEPQFTPLTGEFKEPDQVNPLQEAKH 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1427g00005 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 368 IPR036638 GO:0046983
Vivi1427g00005 456 MobiDBLite consensus disorder prediction 160 288 - -
Vivi1427g00005 456 MobiDBLite consensus disorder prediction 221 270 - -
Vivi1427g00005 456 Gene3D - 296 371 IPR036638 GO:0046983
Vivi1427g00005 456 CDD bHLH_AtBPE_like 289 374 - -
Vivi1427g00005 456 SMART finulus 305 355 IPR011598 GO:0046983
Vivi1427g00005 456 FunFam Basic helix-loop-helix transcription factor 296 368 - -
Vivi1427g00005 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 349 IPR011598 GO:0046983
Vivi1427g00005 456 MobiDBLite consensus disorder prediction 436 456 - -
Vivi1427g00005 456 Pfam Helix-loop-helix DNA-binding domain 302 350 IPR011598 GO:0046983
Vivi1427g00005 456 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 203 392 IPR024097 GO:0006355
Vivi1427g00005 456 MobiDBLite consensus disorder prediction 271 285 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1427g00005 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 38.526 1.96e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1427g00005 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1427g00005 - - tpra:123921399 647.121