Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi141g00016 ATGGAGACTATGGAAACCATCGGTAGCTCCGCACTCAAAATTATTTGTGCCCTCTCGTTTCATGAGTACCTTAATAGTGCTATTATTGTTGCTTCTGTTATCAGTGTTGTTAGATGTTTCACTTGGAATGGTTGTAGCAACGGTGATGGCGATGGGTGTGGGATAGAGATTCTCATTTTGTTTGATCATTCATTTCCTTTTTTCTTCGCATGTTTATTTAAAAATAATCTCTCTATACCGACATGCACAGTAATTAATTTCTATTATAAAATAAGAAAAAGAAATATATTCTCCGGCTGGCGTCCTTCGTCCATTTCTTCATCTTCTTCTCACAGCGTCTTCCTCATCGGAGTGTCCGGAGGTACTGCATCGGGGAAAACCACTGTGTGTGACATGATTATTCAACAACTGCAAGATCATAGAGTTGTTCTAGTTAATCAGGATTCGTTTTATCGTGGTTTAACTAAAGATGAGTTGAAACGCGATCATGAGTATAATTTTGATCATCCTGATGCATTTGATACCGAGCAACTTGTAGAAACACTCATCAAACTTAAATCTGGGCAGTCTGTTCAGGTTCCTGTTTATGATTTTAAGCTTCACCAGAGAGCTTCTGATAGATACCAACAGGTCAATGCATCTGAAGTAGTTATTTTGGAGGGTATATTGGTTTTTCACGAACAACGTGTCCGCGACTTGATGAATATGAAGATATTTGTTGATGCAGATCCTGATGTAAGGCTTTCCCGGAGAATAAGACGAGATACGGTTGAGAGGGGTAGAGATGTGCACTCTGTACTGGAACAGTATGCTAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGACATAATCATACCTCGTGGGGGAGATAATCGTGTAGCAATTGACTCGATCGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTATGTAAGATATATCCAAATTTGCATGTGATACAGTCTACTTTCCATGTGATTTTCGTATTTGACATTTCCTCCTACAAAACTCTGTTTTATAATTTTGCTCCAAGGAGAATTTATTGA 1074 0.3855 METMETIGSSALKIICALSFHEYLNSAIIVASVISVVRCFTWNGCSNGDGDGCGIEILILFDHSFPFFFACLFKNNLSIPTCTVINFYYKIRKRNIFSGWRPSSISSSSSHSVFLIGVSGGTASGKTTVCDMIIQQLQDHRVVLVNQDSFYRGLTKDELKRDHEYNFDHPDAFDTEQLVETLIKLKSGQSVQVPVYDFKLHQRASDRYQQVNASEVVILEGILVFHEQRVRDLMNMKIFVDADPDVRLSRRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNRVAIDSIVQHIRTKLGQHNLCKIYPNLHVIQSTFHVIFVFDISSYKTLFYNFAPRRIY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi141g00016 357 NCBIfam uridine kinase 111 313 IPR000764 -
Vivi141g00016 357 ProSiteProfiles UvrC family, homology region profile. 201 302 IPR001162 GO:0009381
Vivi141g00016 357 FunFam Uridine kinase 110 316 - -
Vivi141g00016 357 Gene3D - 113 326 IPR027417 -
Vivi141g00016 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 306 IPR027417 -
Vivi141g00016 357 CDD UMPK 115 313 IPR000764 -
Vivi141g00016 357 PRINTS Uridine kinase signature 188 203 - -
Vivi141g00016 357 PRINTS Uridine kinase signature 143 154 - -
Vivi141g00016 357 PRINTS Uridine kinase signature 113 130 - -
Vivi141g00016 357 PRINTS Uridine kinase signature 245 255 - -
Vivi141g00016 357 PRINTS Uridine kinase signature 281 294 - -
Vivi141g00016 357 PRINTS Uridine kinase signature 259 270 - -
Vivi141g00016 357 PANTHER URIDINE KINASE 109 318 - -
Vivi141g00016 357 Pfam Phosphoribulokinase / Uridine kinase family 115 301 IPR006083 GO:0005524|GO:0016301
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi141g00016 114 350 PRT Gene Family AT5G40870 76.543 4.33e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi141g00016 K00876 - gmx:100816209 419.083