Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1412g00006 ATGGAGATGAGCTGCTCGTCGAATGTTAATACAGATGTCCCCACATGTTCTACTAGCACAGTTAATGGTCCATACTCACACCAGAGTTTCGGTGGCTTTGTGCAACAGCCTGTTTATGTGAGTGGATGGATGTATGTGAATGAACATGAACAAATGTGTGGTCCATATATTAAGGAGCAGTTATACGAGGGGCTAACTTCAGGTTTCTTGCCATTCGCGCTTCCGGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGGATTATTTCCAACAGTATCCTGACCATGTTTCCACTGGGTTTGCATACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACTATATATAGGCAAGATAGATCTTTTGAGCCTGCCGCTCTTATGGCTGTTAACGCTGATTCAAAGTCTGTTTCACAGTCAAATGTCAATGACTGCACTAAGGATTCCAGTCACTTGAATTTAAACTCAGAGTCTTTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTACGAAACATGGGCCGCATTCCATTTCAGAATTGATTTCATGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCCCATTTTGACAATAAGTATGGAAATTTTGTGTTGTTGGCTGCTGTAAATGCATTGAAAGGAGATATATCTGGAACCATCTGTGGATCAGATTCCCAAAGCAACGGAGTAGGTGATGTGATGAACTTAAATTGTGAAATATCTGAAGACATTTCTTCACAATTGCACATGGGTGTAATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGGATTATTGGCGATATCATTTCAGAATTTGTTACTAAAAAGAAATGCAAAAACCAAAAGCTTAAGTCTTCTGATCGAACTTGCGCGTTGGACAGTAAAATGATGAATAATAGTACTTCCATTCCTCCTAGTGAGCCTGCAGCTTCCCATTTTTTGGATGACCAGGCTTGCCATGAAATTTCCAGACAGTCTTCAATGAGTGTGAAGGCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATTCTGTTGTTCGTAAAGCACTTGTTGATTATTGCTTGCAAATCATGTGGAATGCAGTGTTTTTTGACACGGTAAAAGAGTACTTATTTTCCTGGAGGAAGAGGAAATATTGGTCTCAACCTAAGCCTCCACCAACTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATAAGCAATGTTGATGCTGATATCCAGTCTGGCGTGATGGCGACAGAAAGAGATTGTCATCCTGAGTTGTTTTTATCTACTAATAACTTCAAAAGCCGAAACATAGCCGAAAGTCAAAGAGTTTCATGCAGTTATCCTAATTCTAAAGTTTTGACATGTATTCTTGAACGTGTGGAGAACGATCTTCACTGCTCTGCAAAGGTGTCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAAGTAATTCCTTCCCTAGAAAAAGATAAATTCAGCGAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACCAGTAAAACATCTGTTAAAGAAATTCTAAATGACGAGTCTGTCGATCCTGTGAAAAATAGAGACTCACTTTGGGTGTCTTCACCTGGTAACCGACTGTCTAATCTTTTCTCCAAAGCATTTCAAGAACTGCGTGGACATTTAAATGACGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTCGAGAAAAACTCTCAAATGATATACCCTCACCACAGCTCAAAATTTCGACCTTCAAGAATAGTTGAATGTCATCCCAAGATTACAGCGTATGTTGCAGCTGCACTGTGCAGACAGAAGCTGCATGACGAAGTCCTAGAGAATTGGAAGTTGTCGATTCTTGATTCTACAATTAAACAAGTTCTTATGTCATCACGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAAAAGGAAGTCATTTGGTGCAAATAAGGAACTTTTGAATGATGCTACTTCTGGACTGGGAAAAGGGAAGAAAGGCTCAAAAAATTCTGGAGTTCCTCTGTTGGATGGAAAGCATACATATCAACGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTCTCAGCCTGTTGTAGATGATAATTTAGGGCCAGGGAAGAAGCCTCTGGCTAACTTATGGAAACATGTTTCTGGAGATGTGAATGAGAGTGCAGAAGTTAAAATAACTGCTATTAAATGTGGAAAGACCAAGATGATTAAAGGGAAGAAGGATACATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGCGAAGTTTGCGCATACAGTTCAAAATGGTGTTACAGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTTACCCAGTGATCGATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTATAGATATTATGAAAATTAATGAAAAGAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAATAAATAACTCTGATGTCACCATTCACAAGAAGACCACTTGTCATATCTCTAGCGAGAAACTTAGTGTGACAAATAAAGTGTCAAAATCTAAAAGGAAGCATCAAACAGATGTTGTTACATCCTTACATCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAGAGCTACTGGCAAACAAGTAACTGAGGCACAGAAGAAATCTAACGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGATGTGCTCGGACTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCTAGTCCTGCATGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTTACAAAACAAGTGCAGAAATTCTGAAAACACTTCATCCCAGGTGTCAAATGGTAAGGGTCTTTCTGCAAGAACCAATAGGGTGAAATTGCGTAACCTTCTTGCTGCCGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCGGAGGACTTTGTGATCGAATATATTGGAGAATTAATTCGTCCTCGGATATCTGATATACGTGAGCTTCAATATGAGAAGATGGGAATCGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAGAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAATTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCAGATCATTGAATTAA 3660 0.3948 MEMSCSSNVNTDVPTCSTSTVNGPYSHQSFGGFVQQPVYVSGWMYVNEHEQMCGPYIKEQLYEGLTSGFLPFALPVYPVINGTIMNPVPLDYFQQYPDHVSTGFAYMGMNFADTMMSTNGSSSSQDMTIYRQDRSFEPAALMAVNADSKSVSQSNVNDCTKDSSHLNLNSESFRRIISCQMSGGECCWLYEDKKGTKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLLAAVNALKGDISGTICGSDSQSNGVGDVMNLNCEISEDISSQLHMGVMKAARRVVLDGIIGDIISEFVTKKKCKNQKLKSSDRTCALDSKMMNNSTSIPPSEPAASHFLDDQACHEISRQSSMSVKAVGSIENFWWSYSVVRKALVDYCLQIMWNAVFFDTVKEYLFSWRKRKYWSQPKPPPTVNESKDYVEKIKSEALVLRPGSSISNVDADIQSGVMATERDCHPELFLSTNNFKSRNIAESQRVSCSYPNSKVLTCILERVENDLHCSAKVSLADYVRSVVEKEVNQVIPSLEKDKFSEVDDSNCHISEMLTSKTSVKEILNDESVDPVKNRDSLWVSSPGNRLSNLFSKAFQELRGHLNDVVDEEEVGDMPPGFEKNSQMIYPHHSSKFRPSRIVECHPKITAYVAAALCRQKLHDEVLENWKLSILDSTIKQVLMSSRTIKKNFQSRGHEKRKSFGANKELLNDATSGLGKGKKGSKNSGVPLLDGKHTYQRKKLPRKEFCSSQPVVDDNLGPGKKPLANLWKHVSGDVNESAEVKITAIKCGKTKMIKGKKDTSSKSRSSFNVDNSSPNDQLSLKNKTSQKVAKFAHTVQNGVTDIMKFNEKRPSASSKSRSSFNVDNSLPSDRLSLKNKTSQKVVKFAHTVQNGVIDIMKINEKRLSTSTDNIVGMKVAKINNSDVTIHKKTTCHISSEKLSVTNKVSKSKRKHQTDVVTSLHPAKVLKISNRGSSLRATGKQVTEAQKKSNVSKSLDLCPKSNGCARTSINGWEWHKWSLSASPACRARVRGRLPRLQNKCRNSENTSSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1412g00006 1219 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 19 1219 IPR044570 GO:0042800|GO:0051568
Vivi1412g00006 1219 Gene3D - 177 250 IPR035445 -
Vivi1412g00006 1219 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Vivi1412g00006 1219 ProSiteProfiles Post-SET domain profile. 1203 1219 IPR003616 -
Vivi1412g00006 1219 Pfam SET domain 1092 1196 IPR001214 GO:0005515
Vivi1412g00006 1219 SMART PostSET_3 1203 1219 IPR003616 -
Vivi1412g00006 1219 MobiDBLite consensus disorder prediction 785 817 - -
Vivi1412g00006 1219 Gene3D SET domain 788 1219 IPR046341 -
Vivi1412g00006 1219 MobiDBLite consensus disorder prediction 797 817 - -
Vivi1412g00006 1219 MobiDBLite consensus disorder prediction 682 727 - -
Vivi1412g00006 1219 ProSiteProfiles SET domain profile. 1080 1197 IPR001214 GO:0005515
Vivi1412g00006 1219 MobiDBLite consensus disorder prediction 837 861 - -
Vivi1412g00006 1219 MobiDBLite consensus disorder prediction 840 861 - -
Vivi1412g00006 1219 SUPERFAMILY SET domain 1076 1215 IPR046341 -
Vivi1412g00006 1219 CDD SET_SETD1 1068 1215 IPR037841 GO:0042800|GO:0048188
Vivi1412g00006 1219 SMART set_7 1080 1203 IPR001214 GO:0005515
Vivi1412g00006 1219 SUPERFAMILY GYF domain 181 238 IPR035445 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1412g00006 1071 1219 C2H2 Transcription Factor Family AT2G23740 36.257 8.95e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1412g00006 SET 8.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1412g00006 - - psat:127137952 1545.79