Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1412g00003 ATGGAGATGAGCTGCTCGTCGAATGTTAATACAGATGTCCCCACATGTTCTACTAGCACAGTTAATGGTCCATACTCACACCAGAGTTTCGGTGGCTTTGTGCAACAGCCTGTTTATGTGAGTGGATGGATGTATGTGAATGAACATGAACAAATGTGTGGTCCATATATTAAGGAGCAGTTATACGAGGGGCTAACTTCAGGTTTCTTGCCATTCGCGCTTCCGGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGGATTATTTCCAACAGTATCCTGACCATGTTTCCACTGGGTTTGCATACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACTATATATAGGCAAGATAGATCTTTTGAGCCTGCCGCTCTTATGGCTGTTAACGCTGATTCAAAGTCTGTTTCACAGTCAAATGTCAATGACTGCACTAAGGATTCCAGTCACTTGAATTTAAACTCAGAGTCTTTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTACGAAACATGGGCCGCATTCCATTTCAGAATTGATTTCATGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCCCATTTTGACAATAAGTATGGAAATTTTGTGTTGTTGGCTGCTGTAAATGCATTGAAAGGAGATATATCTGGAACCATCTGTGGATCAGATTCCCAAAGCAACGGAGTAGGTGATGTGATGAACTTAAATTGTGAAATATCTGAAGACATTTCTTCACAATTGCACATGGGTGTAATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGGATTATTGGCGATATCATTTCAGAATTTGTTACTAAAAAGAAATGCAAAAACCAAAAGCTTAAGTCTTCTGATCGAACTTGCGCGTTGGACAGTAAAATGATGAATAATAGTACTTCCATTCCTCCTAGTGAGCCTGCAGCTTCCCATTTTTTGGATGACCAGGCTTGCCATGAAATTTCCAGACAGTCTTCAATGAGTGTGAAGGCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATTCTGTTGTTCGTAAAGCACTTGTTGATTATTGCTTGCAAATCATGTGGAATGCAGTGTTTTTTGACACGGTAAAAGAGTACTTATTTTCCTGGAGGAAGAGGAAATATTGGTCTCAACCTAAGCCTCCACCAACTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATAAGCAATGTTGATGCTGATATCCAGTCTGGCGTGATGGCGACAGAAAGAGATTGTCATCCTGAGTTGTTTTTATCTACTAATAACTTCAAAAGCCGAAACATAGCCGAAAGTCAAAGAGTTTCATGCAGTTATCCTAATTCTAAAGTTTTGACATGTATTCTTGAACGTGTGGAGAACGATCTTCACTGCTCTGCAAAGGTGTCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAAGTAATTCCTTCCCTAGAAAAAGATAAATTCAGCGAGTTGCAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACCAGTAAAACATCTGTTAAAGAAATTCTAAATGACGAGTCTGTCGATCCTGTGAAAAATAGAGACTCACTTTGGGTGTCTTCACCTGGTAACCGACTGTCTAATCTTTTCTCCAAAGCATTTCAAGAACTGCGTGGACATTTAAATGACGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTCGAGAAAAACTCTCAAATGATATACCCTCACCACAGCTCAAAATTTCGACCTTCAAGAATAGTTGAATGTCATCCCAAGATTACAGCGTATGTTGCAGCTGCACTGTGCAGACAGAAGCTGCATGACGAAGTCCTAGAGAATTGGAAGTTGTCGATTCTTGATTCTACAATTAAACAAGTTCTTATGTCATCACGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAAAAGGAAGTCATTTGGTGCAAATAAGGAACTTTTGAATGATGCTACTTCTGGACTGGGAAAAGGGAAGAAAGGCTCAAAAAATTCTGGAGTTCCTCTGTTGGATGGAAAGCATACATATCAACGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTCTCAGCCTGTTGTAGATGATAATTTAGGGCCAGGGAAGAAGCCTCTGGCTAACTTATGGAAACATGTTTCTGGAGATGTGAATGAGAGTGCAGAAGTTAAAATAACTGCTATTAAATGTGGAAAGACCAAGATGATTAAAGGGAAGAAGGATACATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGCGAAGTTTGCGCATACAGTTCAAAATGGTGTTACAGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTTACCCAGTGATCGATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTATAGATATTATGAAAATTAATGAAAAGAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAATAAATAACTCTGATGTCACCATTCACAAGAAGACCACTTGTCATATCTCTAGCGAGAAACTTAGTGTGACAAATAAAGTGTCAAAATCTAAAAGGAAGCATCAAACAGATGTTGTTACATCCTTACATCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAGAGCTACTGGCAAACAAGTAACTGAGGCACAGAAGAAATCTAACGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGATGTGCTCGGACTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCTAGTCCTGCATGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTTACAAAACAAGTGCAGAAATTCTGAAAACACTTCATCCCAGGTGTCAAATGGTAAGGGTCTTTCTGCAAGAACCAATAGGGTGAAATTGCGTAACCTTCTTGCTGCCGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCGGAGGACTTTGTGATCGAATATATTGGAGAATTAATTCGTCCTCGGATATCTGATATACGTGAGCTTCAATATGAGAAGATGGGAATCGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAGAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAATTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCAGATCATTGAATTAA 3666 0.395 MEMSCSSNVNTDVPTCSTSTVNGPYSHQSFGGFVQQPVYVSGWMYVNEHEQMCGPYIKEQLYEGLTSGFLPFALPVYPVINGTIMNPVPLDYFQQYPDHVSTGFAYMGMNFADTMMSTNGSSSSQDMTIYRQDRSFEPAALMAVNADSKSVSQSNVNDCTKDSSHLNLNSESFRRIISCQMSGGECCWLYEDKKGTKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLLAAVNALKGDISGTICGSDSQSNGVGDVMNLNCEISEDISSQLHMGVMKAARRVVLDGIIGDIISEFVTKKKCKNQKLKSSDRTCALDSKMMNNSTSIPPSEPAASHFLDDQACHEISRQSSMSVKAVGSIENFWWSYSVVRKALVDYCLQIMWNAVFFDTVKEYLFSWRKRKYWSQPKPPPTVNESKDYVEKIKSEALVLRPGSSISNVDADIQSGVMATERDCHPELFLSTNNFKSRNIAESQRVSCSYPNSKVLTCILERVENDLHCSAKVSLADYVRSVVEKEVNQVIPSLEKDKFSELQVDDSNCHISEMLTSKTSVKEILNDESVDPVKNRDSLWVSSPGNRLSNLFSKAFQELRGHLNDVVDEEEVGDMPPGFEKNSQMIYPHHSSKFRPSRIVECHPKITAYVAAALCRQKLHDEVLENWKLSILDSTIKQVLMSSRTIKKNFQSRGHEKRKSFGANKELLNDATSGLGKGKKGSKNSGVPLLDGKHTYQRKKLPRKEFCSSQPVVDDNLGPGKKPLANLWKHVSGDVNESAEVKITAIKCGKTKMIKGKKDTSSKSRSSFNVDNSSPNDQLSLKNKTSQKVAKFAHTVQNGVTDIMKFNEKRPSASSKSRSSFNVDNSLPSDRLSLKNKTSQKVVKFAHTVQNGVIDIMKINEKRLSTSTDNIVGMKVAKINNSDVTIHKKTTCHISSEKLSVTNKVSKSKRKHQTDVVTSLHPAKVLKISNRGSSLRATGKQVTEAQKKSNVSKSLDLCPKSNGCARTSINGWEWHKWSLSASPACRARVRGRLPRLQNKCRNSENTSSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1412g00003 1221 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 19 1221 IPR044570 GO:0042800|GO:0051568
Vivi1412g00003 1221 MobiDBLite consensus disorder prediction 787 819 - -
Vivi1412g00003 1221 MobiDBLite consensus disorder prediction 799 819 - -
Vivi1412g00003 1221 MobiDBLite consensus disorder prediction 684 729 - -
Vivi1412g00003 1221 MobiDBLite consensus disorder prediction 839 863 - -
Vivi1412g00003 1221 MobiDBLite consensus disorder prediction 842 863 - -
Vivi1412g00003 1221 CDD SET_SETD1 1070 1217 IPR037841 GO:0042800|GO:0048188
Vivi1412g00003 1221 SMART PostSET_3 1205 1221 IPR003616 -
Vivi1412g00003 1221 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Vivi1412g00003 1221 Gene3D - 177 250 IPR035445 -
Vivi1412g00003 1221 Pfam SET domain 1094 1198 IPR001214 GO:0005515
Vivi1412g00003 1221 ProSiteProfiles SET domain profile. 1082 1199 IPR001214 GO:0005515
Vivi1412g00003 1221 Gene3D SET domain 790 1221 IPR046341 -
Vivi1412g00003 1221 SUPERFAMILY SET domain 1078 1217 IPR046341 -
Vivi1412g00003 1221 SMART set_7 1082 1205 IPR001214 GO:0005515
Vivi1412g00003 1221 ProSiteProfiles Post-SET domain profile. 1205 1221 IPR003616 -
Vivi1412g00003 1221 SUPERFAMILY GYF domain 181 238 IPR035445 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1412g00003 1073 1221 C2H2 Transcription Factor Family AT2G23740 36.257 9.13e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1412g00003 SET 8.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1412g00003 - - psat:127137952 1550.03