Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1411g00005 ATGGCTGCGTCATTATTGAGAAACCGTTCCATTTCGTCGGTACACAATTTGTTCACCAATGCTCTTCGTTGTTTCTCTTCTGCACAGGTTTCAAACACCATTCCCGATGAGGCACGTGAGAGGATGATGTATTCAGACATAAACTCGCAGATTGGGAGTTGTATGCCTCTCTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAATCCAGGGCAAGGTGGAAAGCTTGTCCGAGCGGCCGGAACCAATGCGAAAATCCTGAAAGAGCCCACATCAGCATACTGTTTAGTCCAACTTCCATCTGGTGTTAAGAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACTGTCTCTAATCCAACTCACGGAGATCGCAAGCTCAGGAAGGCTGGCCATAGCAGATGGCTTGGTCGGAGACCCGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCACGGAGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTGCGTGGGGGAAAGGATCCCGCACTCCTTGGGGCAAGCCGACTAAGGGTGGCTTCAAGACTGGACCTCTTAAGCGCAAAAAGTAG 591 0.4975 MAASLLRNRSISSVHNLFTNALRCFSSAQVSNTIPDEARERMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYCLVQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWGKPTKGGFKTGPLKRKK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1411g00005 196 MobiDBLite consensus disorder prediction 150 196 - -
Vivi1411g00005 196 Gene3D - 45 121 IPR014722 -
Vivi1411g00005 196 FunFam 60S ribosomal protein L2, mitochondrial 45 121 - -
Vivi1411g00005 196 FunFam 50S ribosomal protein L2 122 196 - -
Vivi1411g00005 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi1411g00005 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Vivi1411g00005 196 PANTHER RIBOSOMAL PROTEIN L2 44 193 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi1411g00005 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vivi1411g00005 196 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Vivi1411g00005 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1411g00005 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.167 1.18e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1411g00005 - - gmx:100527286 304.679