Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1408g00002 ATGTCACCCAGTTTCATCTTCGACCCTCCCAGCGACGAAGAAATCGAACTCTCCGAACACGAATCTGATTCGGAATCAGAACAAGAACAAGAACAACCAGAATCTCCATCACAATCACAATCAGAATCGGAATCAGAGCTAGAATCAGAAGAAGATGAAGTCATAGAACCGCGAGTTTCGAAAAAGAAAACACAGTCTCCATGGGATTTCACTAAATACTCTGAATCAGTAGCTGAAGAACATGAACGTAGAAGCACAACGTCAGTAAACGACAAAATCTCAGCCGTCAGACAACGTTCAGCGCCCGTCGTTGCTTTGCCTGATTCAGACGATGACAGCGCCTCTGACTCCGAGCCGGATAAACAAGAAGATTATAGACCAGAAGAAGAAGATGAGGAAGAGGGTAACGCCGGTGACACTAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCAGTGCTGATTCCTTCATGCAACTCAATTTGTCTCGCCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCGGCTTGTGTACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTTTCGTCCAAAACGCGTGTATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCTGCCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGACATAAGGAGTTGTCTGATTGTCGGTGGTCTTTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGAATTTGGATGATCTTGCTGTTTTGATCCTTGATGAAGCTGATCGTCTTTTGGAGCTTGGATTTGATGCTGAAGTTCAAGAACTTGTTCGCTTGTGTCCCAGAAAAAGGCAGACCATGCTTTTTTCGGCAACCATGACCGATAAGGTTGCTGATCTTGTTAAACTTTCCCTATCAAAACCACTGCGTCTTTCTGCTGATCCATCTGCTAAACGGCCAGCATCCTTGACTGAAGAAGTGGTTAGAATAAGAAGAATGCGTGAAGTCAATCAGGAAGCAGTTCTTCTTGCAATGTGCACCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACAAAGCAAGCGGCACACAGGCTCAGGATTATATTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGAAGCTTTGGAACAGTTCAGGAAGCAACAGGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATTATCGGTGTTCAAACGGTTATCAATTTTGCTTGTCCACGCGATATTACCAGCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCCGGAAGAGCGGGATCTGCTGTCACATTTGTTACTGATAATGATCGGTCTCTTCTAAAATCTATTGCAAAAAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTGGCAGAGCAATCCATACTCAAATGGTCTCAAGTTATTGAGCAAATGGAGGATCAAATTTCTGAAGTACTTCAAGAAGAGAGGGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACACAGGGATGAGATCTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGGGAAGGAGAAGAAGCTTTCTGCTAAAGCAGCAAAGGCATCCATGGATAAGGAAAATGGTTCTTCTCAGAAGATGGTTAGTGCCCAGGAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAACGGGAGCGAGAGAAAAATATGCCTAGAAAGAAACGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGACAAGCCAAGAGGTAAGGGGACAGATAAGAATGAAAAGGGTGGAATGACACTTGCTGATCTTGCATACCGACGTGCAAAAGCAGTAAAGGCTGTCAAGAGGGCTCTAGATTCTGGGAAGATTGTGAGGAAGCCTCAGAAGAAATCTAATAAATCCACTTCTCGTAAGACTTCCTCTTCTAGGACGGAAGAGATGCGGGAGCTATTCCAAACTGACATGAAGGATAAAAAGCCGAAACAAAGAGGTTCTGGACTTGGAAAGAAGCCCAACAAATCATTCAAAAGCAAGTCAAGGTACAAGCGGAAGTAG 2289 0.4452 MSPSFIFDPPSDEEIELSEHESDSESEQEQEQPESPSQSQSESESELESEEDEVIEPRVSKKKTQSPWDFTKYSESVAEEHERRSTTSVNDKISAVRQRSAPVVALPDSDDDSASDSEPDKQEDYRPEEEDEEEGNAGDTKSFFAPSDGASFSADSFMQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVYAIRVLILTPTRELAAQVHSMIEKLAQFTDIRSCLIVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVNLDDLAVLILDEADRLLELGFDAEVQELVRLCPRKRQTMLFSATMTDKVADLVKLSLSKPLRLSADPSAKRPASLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDITSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKSIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTGKEKKLSAKAAKASMDKENGSSQKMVSAQEAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDEEQDDKPRGKGTDKNEKGGMTLADLAYRRAKAVKAVKRALDSGKIVRKPQKKSNKSTSRKTSSSRTEEMRELFQTDMKDKKPKQRGSGLGKKPNKSFKSKSRYKRK 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1408g00002 762 Pfam DEAD/DEAH box helicase 179 348 IPR011545 GO:0003676|GO:0005524
Vivi1408g00002 762 Coils Coil 533 571 - -
Vivi1408g00002 762 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 108 715 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 1 145 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 111 136 - -
Vivi1408g00002 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 12 30 - -
Vivi1408g00002 762 CDD SF2_C_DEAD 372 504 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 600 762 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 641 673 - -
Vivi1408g00002 762 Pfam Helicase conserved C-terminal domain 392 495 IPR001650 -
Vivi1408g00002 762 Gene3D - 117 362 IPR027417 -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 74 88 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 717 742 - -
Vivi1408g00002 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 534 IPR001650 -
Vivi1408g00002 762 CDD DEADc_DDX27 166 361 - -
Vivi1408g00002 762 MobiDBLite consensus disorder prediction 686 704 - -
Vivi1408g00002 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Vivi1408g00002 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Vivi1408g00002 762 SMART helicmild6 410 495 IPR001650 -
Vivi1408g00002 762 Coils Coil 619 639 - -
Vivi1408g00002 762 SMART ultradead3 174 375 IPR014001 -
Vivi1408g00002 762 Gene3D - 369 541 IPR027417 -
Vivi1408g00002 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1408g00002 110 512 Eukaryotic Initiation Factors Gene Family AT3G13920 31.773 1.02e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1408g00002 K13181 - gmx:100791233 1041.95