Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi13g00005 ATGTCAAAATTGGTCAAATTGAGCCTTAGGAATTGCAAAGTGCAAGGACCAATTCCGGACCTAAGCATGATACCGCACCTTCTTTATGTCGACCTTAGCTTCAATCAGTTGAATGGATCAATTCCTCCTAATAAGCTTGCTGAAAATATCACAACTGTTATTTTATCAAACAACAATCTTACTGGAACTATTCCATCCTATTTTTTTGATCTTCCACGTCTCCAGACATTGTCGCTTGCAAACAATTCATTGGATGGAAGTGTTCCTTCCAGCATTTGGCAGAACAATATTTCAAATGCTGGTAAAAGATTGCTACTAGAGTTGCAAAACAATCAATTTATAAACATATCAGGAAGTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCCCTATGCTCAAATAACACACTGAATCAGTTCTGTAAACTTGAAGGAGCTGGTAGTGAAACAAATGGCACATCTCCAAAAAACTCCAGTGACCCTTGTCCAAATCAAAGATGTCCACCTCATGAATTCTATGTGAACTGTTTCTGTGTGGCTCCATTGATTATCGGTTATCGACTGAGAAGTCCTAGTTTTTCAGATTTTACTCCATATTTCCCTTCTAATCTTACGCTGCATGCCAATCAACTAAGTTATACTTATGAGTGGCAAGTAGGACCACAGTTGGTAATGATCTTGAACCTTTATCCTGAATATGTTGATAACAATAGCTCTCAAACTTTCAATTCAAGTGAGATCCAACGGATTGCAAACATGTTCACTGGATGGTTCATTCCTAACCTTGATATGTTCGGGCCTTATGACCTGATGGATCGGATTCGTTATGGGACTGAGACCCCTTCCGATTCAGACTTAACCACAGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCATGTGTGTTGTCGTTGTCAGCAATTTTTATTCTTTTAATATTAAGAATAAGATTAAGACGACCTGATGCAGTTTCTAAACCACGTCATTCATCTAAGATCTCAATGCAAATTGATGGCACAAGAGCTTTTACTTACGAGGAGTTGTCTGCTGCTACAAGCAATTTTGACAACAATGCTCAAATTGGACAAGGAGGCTACGGGAAGGTTTATAAAGGTATTCTTTCTAATGGAACTGTGGTTGCCATAAAACGTGCACAGCAAGGATCACTGCAAGGTGAGAAGGAATTTCTCAGAGAAATAAGAATACTATCAAGGATACATCATCGCAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAAGGGGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACTCTAAGAGACCACCTTTCTGTTACATCAGAAAAACCTTTGACATTTGCTATGAGATTGAAGATAGCACTCGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCTGACCCTCCGATATTTCACCGAGATGTTAAATCAAGCAACATATTATTAGACTCTAAGTTTACTGCAAAAACTGCAGACTTTGGACTTTCACGACTTGCCCCAGTTTCAGATGTTCACGGCGTTGTACCTGGTCATGTATCCACGGTAGTAAAGGGCACACCGGGTTACCTTGATCCAGAGTACTTCTTAACACACATTGACTGA 1629 0.3959 MSKLVKLSLRNCKVQGPIPDLSMIPHLLYVDLSFNQLNGSIPPNKLAENITTVILSNNNLTGTIPSYFFDLPRLQTLSLANNSLDGSVPSSIWQNNISNAGKRLLLELQNNQFINISGSTNLPPNVTLLLDGNPLCSNNTLNQFCKLEGAGSETNGTSPKNSSDPCPNQRCPPHEFYVNCFCVAPLIIGYRLRSPSFSDFTPYFPSNLTLHANQLSYTYEWQVGPQLVMILNLYPEYVDNNSSQTFNSSEIQRIANMFTGWFIPNLDMFGPYDLMDRIRYGTETPSDSDLTTGALVGIILGSIACVLSLSAIFILLILRIRLRRPDAVSKPRHSSKISMQIDGTRAFTYEELSAATSNFDNNAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLREIRILSRIHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKTADFGLSRLAPVSDVHGVVPGHVSTVVKGTPGYLDPEYFLTHID 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi13g00005 542 Gene3D Transferase(Phosphotransferase) domain 1 435 541 - -
Vivi13g00005 542 SMART serkin_6 359 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00005 542 SUPERFAMILY L domain-like 2 218 - -
Vivi13g00005 542 PANTHER RECEPTOR-LIKE PROTEIN 55 3 540 - -
Vivi13g00005 542 Gene3D Ribonuclease Inhibitor 1 180 IPR032675 -
Vivi13g00005 542 ProSiteProfiles Protein kinase domain profile. 359 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00005 542 Pfam Protein kinase domain 361 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00005 542 Gene3D Phosphorylase Kinase; domain 1 329 434 - -
Vivi13g00005 542 FunFam Leucine-rich repeat protein kinase family protein 323 434 - -
Vivi13g00005 542 SUPERFAMILY Protein kinase-like (PK-like) 333 540 IPR011009 -
Vivi13g00005 542 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Vivi13g00005 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vivi13g00005 542 Pfam Leucine rich repeat 49 94 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi13g00005 4 540 Receptor kinase-like Gene Family AT5G37450 48.696 2.02e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vivi13g00005 Pkinase 3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi13g00005 - - vvo:131621470 1072.77