Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi13g00002 ATGTATCTTTCAAAGGTTTGCATCTTATGGTTCTGCTGTTGTTTCATACCGGCTGCTGCGCAACTTATCAATGTTACTGACCCTACTGAAGTGCTAGCATTGAGGAGCATACATGAAAGTTTGATTGATCCAAATGGGCATTTGAGCAATTGGAATGATGATGATCCATGCCTATCTAACTGGATAGGAGTTGTGTGCTCTAATGAAACAATAGAAGAAAACTTTCTGCATGTTGTAGAATTGGAACTACTGAGATTGAACTTGTCTGGAACTTTGGCACCAGAAATTGGCAACTTGGCTTATTTGAAAATATTGAATTTCATGTGGAACAACATAAGTGGGACAATTCCAGTTGAAATTGGCAATATCACATCTTTGGAACTTTTGTTCTTAAGTGGAAATGAATTAACAGGACCAGTGCCGGAACAACTTGGGTTTCTTCCAAAACTACGTATTATGCAAATTGATGAAAACAAATTATCAGGACCTATACCTTTATCATTTGCAAATCTGAACAATACAAAACACTTTCACATGAACAATAACTCACTTAGTGGACAAATTCCACCAGAACTTTCCAAATTATCAAGCCTTATTCACCTGCTTTTGGACAACAATAATTTATCAGGAATTCTTCCTCCTGAGCTATCCGATACACCAAACTTGAGTATACTCCAGCTTGACAACAATAACTTTGGAGGAAATAGCATTCCAGATTCTTACGTCAACATGTCAAAATTGGTCAAATTGAGCCTTAGGAATTGCAACTTGCGAGGACCAATTCCTGATTTAAGCTTGATACCACACCTTCTTTATATTGACCTTAGCTCCAATCAGTTGAATGGATCAATTCCTCCTAATAAGCTTGCTGAAAATATCACAACTGTTATTTTATCAAACAACAATCTTACTGGAACTATTCCATCCTATTTTTCTAATCTTCCACGACTCCAGAAATTGTCGCTTGCAAACAATTTATTGAGTGGAAGTGTTCCTTCCAGCATTTGGCAGAACAAAATTTCAAATGCTGGTCTAAAATTGCTACTAGAGTTGCAAAATAATCGACTTATAAACATATCAGGCAGTACTAATCTTCCTCCAAATGTCACACTCTTGCTTGATGGTAATCCCCTATGCTCAGATAACACATTGAGTCAGTTCTGTAAACTTGAAGGAGCTGGTAGTGAAACAAATGGCACATCTCCAAAAAACTCCAGCAACCCTTGTCCAAATCAAAGATGTCCACCTCCTTATGAATTCTATGTGAACTGTTTCTGTGTTGCTCCATTGATTATTGGTTATCGACTGAGAAGTCCTGGTTTTTCAGATTTTCCTCCATATTTCACTGCATTTGAGGAATATTTGACTTCTAATCTTAAGCTACATGCCAATCAACTAAGCTATACTTTTGAGTGGCAAGTAGGACCACGGGTGCTAATGATCTTGAAGCTTTATCCTGAATATGTTGATAACAATAGCTCTCGCACTTTCAATTCAAGTGAGATCCAACGGATCAGAAACATGTTCACTGGATGGGTCATTCCTAACCGTGATTTGTTCGGGCCTTATGACCTGATGGATCTGGTTCCTTATAATAACGGGACCGAGACCTCTTCCAATTCAGGCATAAGCACGGGTGCTTTGGTTGGCATAATCTTAGGCTCAATTGCGTGTGTAATTTCGTTGTCTGCAATTTTTATTCTTTTACTATTAAGAATACGATTAAGACGTCATGATGGAGTCTCCAAACCACGTCATTCATCTAAAATCGCAATACAAATTGATGGTACAAGAGCCTTTACTTATGAGGAGTTGTCTGCTGCTACAAACAATTTTGACAGCCATGCTCAAATTGGACAAGGAGGTTATGGGAAGGTTTATAAAGGTATTCTTTCTAATGGCACTGTGGTTGCCATAAAACGTGCACAGCAAGGATCACTGCAAGGTGAGAAGGAATTTCTCACAGAAATAAGAATACTATCAAGGATACATCATCGCAACCTCGTGTCTCTGATTGGATATTGTGATGAAGAAGGGGAACAGATGCTGGTTTATGAATTTATGTCCAATGGCACTCTAAGGGACCACCTTTCTGTTACATCAGAAAAACCTTTGACTTTTGCTATGAGATTGAAGATAGCACTCGAGTCAGCTAAAGGTCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTTAAATCAAGCAACATATTATTAGACTCTAAGTTTACTGCAAAAGTTGCAGACTTTGGACTTTCACGTCTTGCCCCAGTTTCAGATGTTCAAGGCGTTGTACCTGGTCATGTATCCACAGTGGTAAAGGGCACGCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCATACATTGACCGACAAGAGTGATGTTTACAGTCTTGGTGTTGTGTTTCTAGAACTTTTGACTGGGATGCATCCCATCGCACATGGGAAAAATATTGTCAGAGAGGTTAGTCTTGCTTTTGAATCGGGTGAGATATCTTCAGTTATTGATAAACACATGGGGTCTTATCCATCTGAGCATGCAGAAAAGTTTTTAAAATTGGCTCTGAAGTGTTCTGAAGATGAGCCCGAGCCACGTCCTAAAATGGCCCAAGTGGTTAGAATACTTGAAAACATGTGTTCTGTGATGACAGATTCAGATACAACGAGAGATACATCTACAAGCAGTGATTCTCGCAAAACAGTCAGCTTTCTAGGCACACCTTCTTCATCCTCAACCATAAATACTCCCTTTGTATTAAGAACTGTATAA 2787 0.3893 MYLSKVCILWFCCCFIPAAAQLINVTDPTEVLALRSIHESLIDPNGHLSNWNDDDPCLSNWIGVVCSNETIEENFLHVVELELLRLNLSGTLAPEIGNLAYLKILNFMWNNISGTIPVEIGNITSLELLFLSGNELTGPVPEQLGFLPKLRIMQIDENKLSGPIPLSFANLNNTKHFHMNNNSLSGQIPPELSKLSSLIHLLLDNNNLSGILPPELSDTPNLSILQLDNNNFGGNSIPDSYVNMSKLVKLSLRNCNLRGPIPDLSLIPHLLYIDLSSNQLNGSIPPNKLAENITTVILSNNNLTGTIPSYFSNLPRLQKLSLANNLLSGSVPSSIWQNKISNAGLKLLLELQNNRLINISGSTNLPPNVTLLLDGNPLCSDNTLSQFCKLEGAGSETNGTSPKNSSNPCPNQRCPPPYEFYVNCFCVAPLIIGYRLRSPGFSDFPPYFTAFEEYLTSNLKLHANQLSYTFEWQVGPRVLMILKLYPEYVDNNSSRTFNSSEIQRIRNMFTGWVIPNRDLFGPYDLMDLVPYNNGTETSSNSGISTGALVGIILGSIACVISLSAIFILLLLRIRLRRHDGVSKPRHSSKIAIQIDGTRAFTYEELSAATNNFDSHAQIGQGGYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEIRILSRIHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKGLMYLHTEADPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVSDVQGVVPGHVSTVVKGTPGYLDPEYFLTHTLTDKSDVYSLGVVFLELLTGMHPIAHGKNIVREVSLAFESGEISSVIDKHMGSYPSEHAEKFLKLALKCSEDEPEPRPKMAQVVRILENMCSVMTDSDTTRDTSTSSDSRKTVSFLGTPSSSSTINTPFVLRTV 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi13g00002 928 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Vivi13g00002 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Vivi13g00002 928 Gene3D Ribonuclease Inhibitor 183 291 IPR032675 -
Vivi13g00002 928 PANTHER RECEPTOR-LIKE PROTEIN 55 36 884 - -
Vivi13g00002 928 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 688 898 - -
Vivi13g00002 928 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 28 189 - -
Vivi13g00002 928 FunFam Leucine-rich repeat protein kinase family protein 576 687 - -
Vivi13g00002 928 Pfam Leucine rich repeat 292 337 IPR001611 GO:0005515
Vivi13g00002 928 SMART serkin_6 612 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00002 928 Pfam Protein kinase domain 614 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00002 928 Gene3D Phosphorylase Kinase; domain 1 583 687 - -
Vivi13g00002 928 Gene3D Ribonuclease Inhibitor 292 380 IPR032675 -
Vivi13g00002 928 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Vivi13g00002 928 CDD STKc_IRAK 618 884 - -
Vivi13g00002 928 SUPERFAMILY L domain-like 41 391 - -
Vivi13g00002 928 SUPERFAMILY Protein kinase-like (PK-like) 597 901 IPR011009 -
Vivi13g00002 928 ProSiteProfiles Protein kinase domain profile. 612 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi13g00002 928 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vivi13g00002 928 Gene3D Transferase(Phosphotransferase) domain 1 688 907 - -
Vivi13g00002 928 MobiDBLite consensus disorder prediction 889 916 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi13g00002 12 893 Receptor kinase-like Gene Family AT5G01950 55.642 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vivi13g00002 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi13g00002 - - gmx:100786467 1286.55