Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi139g00004 ATGAAGCTTTTTCCAATGCCATATCTTCTTTTGTGCCTTTGTATGTTTGTAAATACCACATCACCTGTTCCACACCATATTCAAGGCAGCGAGGCAGATGCTCTATTGAAGTGGAAAGCAACCCTTGACAACAATAGCCAGCCTTTGCTTTCATCATGGATTGGTGACAATCCTTGTGGTTGTGAGGGAATCACATGTGATCATCAGTCCAAGTCCATCTATAAGGTAAATCTCACCGGTATTGGACTAAAAGGTACGCTTCAGAGTCTCAATTTCTCATCACTTCCAAAACTCCATACTTTACTTCTAAAAAACAACTTGTTCTATGGTGTTGTTCCACATCATATTGAAGCATTGTCCAATCTAGACACTCTTGATTTTTCACAAAACAATTTCTATGGTACTATTCCCATTAGCATTTGTAATCTGTCCCAACTCTCATATCTTGATCTTAGTGAGAATCATCATCTCACTGGGATTATTCCATCTGAGATAGGTAGACTGAGAAATCTAGAAAACCTTCATTTTCATAGCTGCAATCTCACAGGGACTATACCAATATCAATAGGAATGTTGACCAATATATCAACTCTCTTGTTATATGGTAACACACTTTCAGGCCACATTCCTCGTGAAATTGGAAAGTTATTCAATGTCAAGAAGCTATATTTTGGATGGAATAGTCTTTATGGCTTCATTCCTCAAGAAATTGGTTTTCTAAAAAAAGTCAGTGAACTAGATTTGTCTATGAACAATCTCTTTGGCGCAATCCCTTCTACTATTGGAAACTTGAGCAATTTACATCATCTTTACCTTCATCACAACCATCTCACCGGTAGCATTCCCACAGAAATTGGAAATCTATACTCCCTTTCCTCATTTCGGCTGTTAAATAACAACCTCTCCGGATCAATCCCTTCGTCCATTGGTAACTTGGTCAATTTGGACAATATTCTCCTTCTGTCAAATAATCTTTCTGGACCAATTCCTCCGACTATCGGAAATTTGACAAAACTTACGAGCTTAAAGCTTTTCTCTAATGCTCTGAGTGGCAATATTCCAACAGAAATGAATAGGCTTACCAATTTCGAAACATTACAACTAGATTATAATAACTTCATAGGTCAATTACATCACAACATTTGTGTTGGTGGAAAGTTAAAAAGGTTCACTGGAAATATAACAGATAGTTTTGGTGTGTATCCACAGTTAGATTACTTGGAATTAAGTGATAATCAATTTTATGGCCATCTATCACCAAATTGGGGAAACTGCAAGAATCTCACATCCCTTAAAATTGACAATAATAATTTAACAGGAACAATTCCGTCAGAATTGGGTAGAGCAACAAATTTACATGAACTTAACTTGTCTTCCAACCATCTTACAGGAAGAATTCCAAAGGAGTTAGATAACTTAGTTTCATTGATCGAACTCTCAATAAGTAACAATCATCTTTTGGGAGAAGTACCTGTACAAATGGCATCATTGCAGCAGCTGAATAACTTGGATCTTTCATCAAACAATTTAAGTGGTTCCATCCCAAAACAACTTGGAAGTTTGTCAATGTTATTGCATTTGAAATTGGGCAAAAATAAGTTTGAGGGAAACATTCCCAGTGAGATTGGAAAACTAAAAGATACTGAAGATCTCGATCTTAGTAGAAATGTTTTGAATGAAACCATACCGGAAATGCTTGGACAGTTATATCGTTTAGAAACATTGAATCTCTCACATAATAAACTTTCTGGTCTCATTCCCTTTAGTTATGGTGATATGTTAGCCTTGACAAATGTTGATATATCATACAATCAATTGGAGGGTCCGATTCCAAGCATTCAGGCCTTCCAAAATGCTTCAATTGAAGCTTTAAGAAATAACAAAGGCTTGTGCGGAAATGTCTCTGGCCTAATGTCTTGCTCAACATCAACTGAAAAATTTCATAGTCGTAAGACCAAGAAAATTTTGATGTTAGTTTTATCCCTCACTCTATGCACTCTGTTGTCAGCATTATTTGTTTATGGGATCAAAATATACTATCGTTATCGAGCTTCAAGCACAAGAGAATGCAACCCTAGAGGAGAGTCTCATGATCAAAATATATTTGCAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATCGAAGCCACAGAAGAGTTTGACAACAAGTATCTCATTGGAGATGGAGGACAGGGAAGTGTTTACAGAGCAGAATTGCCTACTGGGCAAGTTGTAGCTGTAAAGAAACTTCATTCATTACAAAATGGAGAAATGTCAAATCTGAAGGCTTTTTCAAGTGAGATAAAAGCTTTAACAGAAAGTCGACATCGAAACATTGTGAAGTTATATGGGTATTGTTCACATCCATTGCATTCTTTTTTAGTTTATGAGTTCTTGGAGAAGGGTAGTGTGGACAAGATCTTGAAAGACAATGAGCAAGCAACTACATTTGATTGGAATAAGAGGGTTGATGTTATTAAAGATGTTGCAAATGCTTTATGCTATATGCATCATGATTGTTCCCCTCCAATTGTTCATCGCGATATCTCCAGCAAGAATGTTATTTTGGATTTGGAATACGTAGCTCATGTATCAGACTTCGGAACAGCTAAGTTTCTAAATCCTGATTCATCCAACTGGACTTCTTTTGCTGGAACATTTGGATATGCTGCTCCAGAACTTGCCTACACAATGGAAGTAAATGAGAAGTGTGACGTGTATAGTTTTGGTGTATCAACAATGTTGCAATCAAGTGGTTTAGGTGTTGAAATTGATGATTTGTGGTTGATTGATAAGTTGGATCAACGCCTCCCTCGTCCTATTAAGGATATTGAGAAAGAAGTGATATCAATGATGAAGATTGCATGTCATTGCATAACTGAGAGCCCATGCAGTCGCCCTACAATGGAACATGTTTGCAAGGAGATTGTAAATTGTAATGTCAAAACCAACTTTAAGGGTTGA 2973 0.3666 MKLFPMPYLLLCLCMFVNTTSPVPHHIQGSEADALLKWKATLDNNSQPLLSSWIGDNPCGCEGITCDHQSKSIYKVNLTGIGLKGTLQSLNFSSLPKLHTLLLKNNLFYGVVPHHIEALSNLDTLDFSQNNFYGTIPISICNLSQLSYLDLSENHHLTGIIPSEIGRLRNLENLHFHSCNLTGTIPISIGMLTNISTLLLYGNTLSGHIPREIGKLFNVKKLYFGWNSLYGFIPQEIGFLKKVSELDLSMNNLFGAIPSTIGNLSNLHHLYLHHNHLTGSIPTEIGNLYSLSSFRLLNNNLSGSIPSSIGNLVNLDNILLLSNNLSGPIPPTIGNLTKLTSLKLFSNALSGNIPTEMNRLTNFETLQLDYNNFIGQLHHNICVGGKLKRFTGNITDSFGVYPQLDYLELSDNQFYGHLSPNWGNCKNLTSLKIDNNNLTGTIPSELGRATNLHELNLSSNHLTGRIPKELDNLVSLIELSISNNHLLGEVPVQMASLQQLNNLDLSSNNLSGSIPKQLGSLSMLLHLKLGKNKFEGNIPSEIGKLKDTEDLDLSRNVLNETIPEMLGQLYRLETLNLSHNKLSGLIPFSYGDMLALTNVDISYNQLEGPIPSIQAFQNASIEALRNNKGLCGNVSGLMSCSTSTEKFHSRKTKKILMLVLSLTLCTLLSALFVYGIKIYYRYRASSTRECNPRGESHDQNIFAIWSFDGKMVYENIIEATEEFDNKYLIGDGGQGSVYRAELPTGQVVAVKKLHSLQNGEMSNLKAFSSEIKALTESRHRNIVKLYGYCSHPLHSFLVYEFLEKGSVDKILKDNEQATTFDWNKRVDVIKDVANALCYMHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVSTMLQSSGLGVEIDDLWLIDKLDQRLPRPIKDIEKEVISMMKIACHCITESPCSRPTMEHVCKEIVNCNVKTNFKG 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi139g00004 990 Gene3D Ribonuclease Inhibitor 388 643 IPR032675 -
Vivi139g00004 990 ProSiteProfiles Protein kinase domain profile. 723 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi139g00004 990 ProSiteProfiles Leucine-rich repeat profile. 571 592 IPR001611 GO:0005515
Vivi139g00004 990 Pfam Protein kinase domain 725 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi139g00004 990 PANTHER LEUCINE RICH REPEAT KINASE 2 309 982 - -
Vivi139g00004 990 Gene3D Transferase(Phosphotransferase) domain 1 802 989 - -
Vivi139g00004 990 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Vivi139g00004 990 SUPERFAMILY Protein kinase-like (PK-like) 704 978 IPR011009 -
Vivi139g00004 990 ProSiteProfiles Leucine-rich repeat profile. 451 474 IPR001611 GO:0005515
Vivi139g00004 990 Gene3D Phosphorylase Kinase; domain 1 686 801 - -
Vivi139g00004 990 FunFam MDIS1-interacting receptor like kinase 2 isoform A 281 381 - -
Vivi139g00004 990 Gene3D Ribonuclease Inhibitor 281 387 IPR032675 -
Vivi139g00004 990 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
Vivi139g00004 990 FunFam Leucine-rich repeat receptor-like protein kinase TDR 383 642 - -
Vivi139g00004 990 PRINTS Leucine-rich repeat signature 500 513 - -
Vivi139g00004 990 PRINTS Leucine-rich repeat signature 569 582 - -
Vivi139g00004 990 SMART LRR_typ_2 119 143 IPR003591 -
Vivi139g00004 990 SMART LRR_typ_2 497 521 IPR003591 -
Vivi139g00004 990 SMART LRR_typ_2 192 216 IPR003591 -
Vivi139g00004 990 SMART LRR_typ_2 569 592 IPR003591 -
Vivi139g00004 990 SMART LRR_typ_2 336 360 IPR003591 -
Vivi139g00004 990 SMART LRR_typ_2 264 288 IPR003591 -
Vivi139g00004 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 187 280 - -
Vivi139g00004 990 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Vivi139g00004 990 ProSitePatterns Tyrosine protein kinases specific active-site signature. 847 859 IPR008266 GO:0004672|GO:0006468
Vivi139g00004 990 SUPERFAMILY L domain-like 57 376 - -
Vivi139g00004 990 SUPERFAMILY RNI-like 281 614 - -
Vivi139g00004 990 FunFam Nuclear pore complex protein NUP107 28 186 - -
Vivi139g00004 990 Pfam Leucine rich repeat 550 606 IPR001611 GO:0005515
Vivi139g00004 990 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Vivi139g00004 990 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vivi139g00004 990 FunFam Leucine-rich repeat receptor protein kinase MSP1 685 801 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi139g00004 9 895 Receptor kinase-like Gene Family AT4G08850 43.333 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi139g00004 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi139g00004 - - gmx:100811066 1062.37