Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi139g00003 ATGCTTCAAAGAATGAAGCTGTGTCTTGTTTTGTTTCTTTCAGTGTTTGTAATGGCCATGTCAGTGTCACCTCTTACTGCAGCAAACAACCAAAGGAGAGAGGCAAATGCTCTGTTAAAGTGGAAACAAAGCTTTGACAACCAAAGCAAGGCTTTGCTTTCTTCATGGATTGGTAATAGTCCTTGTAGTTGGGAGGGAATCACATGTGATCACGAGTCTAAATCCATCAGCCAAGTAAATCTCACCAATTTTGGACTAAAAGGTACGCTTCAGAGTCTCAATTTCTCTTCACTTCCAAAAATCCGCACCTTAGTCTTAAAAAACAACTCCTTGCATGGAATTGTTCCATACCATATTGGTGTAATGTCCAATCTAAACACTCTTGATTTGTCATATAACAATCTCTCTGGTACTATTCTCAATACTATTGGTAATCTGTCTAAACTCTCCTATCTTGGTCTTAATAACAACAATCTCTTTGGAATTATTCCTTCTGAGATTACCCAATTGATTGGTCTTTCTGTATGGTTTATGGGTTTTAATAGTGAATTAAGTGGACCCCTCCCTCAAGAAATTGGTAAAATGAGGAATCTCACAATTCTTGATAGCCCCTGGTGCAATCTCACAGGAACTATACCCGTCTCAATAGAAAAGATAACTAATTTGTCTCATATGGATGTCGGAGGAAATAAACTCTATGGCAACATTCCTTCTGAAATAGGCAAGTTAGTCAACCTGGAGATACTAAGTTTTTATAATAATAGCCTTTCTGGATCCATTCCTCGTGAAATAGGCAATTTAGTCAACCTTGAGAAACTAATTCTTGATTTTAATAGCCTTTCTGGACCCATTCCTCGTGAAATTTTCAAGTTGGTTAACCTTGAGATACTAACTATTGGTAATAATGGTCTTTCTGGTTCCATTTCTCGAGAAATTGGTAACTTGGTTAAACTTCAGATACTATTTCTTGAACATAACATTCTTTCGGGCTTCATTCCTCGAGAAATTGGATCTTTAAAACAACTCTATGAACTTGATTTATCTAACAATCATCTCTCTGGCCCAATCCCTTCAACAATTGGAAACTTGAGCAGTATGAAATTTCTCTACCTTTATCATAACGATTTTACTGGTATCATTCCAACTGAAGTGGGAAAACTTTCTTCTCTTTTAACAATTCAATTGTTGGATAATAACCTCTCTGGACCAATACCACCATCTATAGGTAATTTGACTAATTTAAACTCTATTCTGCTTAGTCAAAATAACCTTTCCGGATCAATCCCACCATCTCTAGGTAATTTGGTTAATTTGGATTCTATTGACCTTTCACAAAATAACCTTTCCGGACCAATCCCACCATCCATAGGTAATTTGATTAATTTAAACTTTATTCTGCTTAGTCAAAATAACCTTTCCGGAACAATCCCACCATCTATAGGTAATTTGATTAATTTAAACTCTATTCTGCTTAGTCAAAATAACCTTTCCGGAACAATCCCATCATCGATAGGTAATTTGACTAATTTAAACTCTATTATGCTTAATCAAAATAACCTTTCCGGACCAATCCCACCATCAATAGGTAATTTGGTTAATTTGAATTCTATTGAACTTTCTCAAAATAACCTTTCCGGAACAATCCCACCATCAATAGGTAATTTGGTTAATTTGAATTCTATTGAACTTTCTCAAAATAACCTTTCCGGACCAATCCCACCATCTATAGGTAATTTGGTTAATTTGAATTCTATTGACCTTTTTCAAAATATCCTTTCCGGACCAATCCCACCTTCGATAGGTAATTTGGTTAATTTGGATTCTATTGACCTTTCTCAAAATAACCTCTCTGGATCTATTCCTTCCACTATTGGAAATTTAACAAAACTCACTGGTTTATATCTTCCCTCAAATCAATTTAGTGGAAATTTTCCAAATGAAATGAACATGATACCCAATTTGAAAAATTTGCAATTATCTTATAACAATTTTATAGGTCATTTACCTCACAATATTTGTGCTGGTGGTAATTTGGAACAATTCACTGCTATATTTAACCAGTTCACAGGTCCAATTCCTAAGAGTTTATATAATTGCTCAAGCCTTGTGAGAGTAAGACTTGAAAATAATCAACTGACTGGAAATATAACAGAAAGTTTTGGTGTGTATCCACATTTAGACTACATGGAATTGAGTCATAATGGTTTTTATGGCCATTTATCATCAAATTGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAATAACAATTTAACAGGAAGCATACCACCACAATTGGCTGATGCAGTTAACTTAGGTGAACTTAACTTGTCTTCAAACCATCTTACTGGAAATATTCCAAAGGAGTTTGAAAACTTATCTTTGTTGTACAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGCACAAATTGCATCATTGCGTGAACTAACTGCCTTGGAGCTCGCAACAAATAATTTCAGTGGATTCATCCCTGAAAGTCTCGCAAGGTTGTCTAAGTTACTGATGTTGAATTTGAGTAAAAACAAGTTTGAAGGAAGCATTCCTGTTGAGTTTGGAAAATTGAATGTTATTGAAAATCTTGATCTTAGTGAGAATTTTTTAAATGGAACCATCCCAGCAATGTTTGGTCAATTAAATTCCTTAGAAACATTGAATCTCTCACACAATAATCTTTCTGGTACTATTCCCTTGAAATATGGTGAGATGTTGAGCTTGACAAATGTGGATATATCATACAACCAGTTGGAGGGTCCGGTTCCAAGCATTTCAGCTTTCCAAAATGCTTCATTTGAAGAACTCAGAAATAACAAAGGCTTGTGCGGTAACGTATTTGGCCTAGAGCCTTGCTCAACACCAGGTGACAAGTTTCATAATCATAAGAATAACACAATTTTTGTGTTAGTCTTACCCATCACTCTAGGCACTCTCTTTTTAGCATTATTTGCTTATGGGCTCGCATATCATATATGTCGAACTTCAAGAGAAAACAAGGCTCCTGAAGAATCACCAACAGAAAATCTATTCACAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGGCATGGAAGTGTTTACAGAGCTGAATTGCCCACAGGTCAAGTTGTAGCTGTGAAGAAAATCCATTCATTACAAAATGGAGAAATGTCAAATCTGAAAGCTTTTGAAAGTGAGATCAAAGCTTTAACAGAAATCCGACATCGAAACATTCTGAAGTTATATGGGTATTGTTCACATCCATTGCATTCGTTCTTGGTTTATGAGTTCTTGGAGAATGGTAGCGTCGACAAGATCTTGAAAGAGGATGAGCTTGCAACTACATTTGATTGGAAAAGAAGGGTGAATGCAATTAAGGATGTTGCAAATGCTTTATGCTACATGCATAATGATTGTTCACCTCCAATTGTTCATCGCGATATCTCCAGTAAGAATGTCATTTTGGATTTGGAATATGTAGCTCATGTATCAGACTTCGGAACAGCTAAGTTTCTAAATCCAGATTCATCCAACTGGACCGCTTTTGTTGGAACATTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAGTGTGATGTGTACAGTTTTGGAGTATTAACCATGGAAATACTTTTTGGAAAGCATCCAGGAGACACTGTATCGACATTGTTGCAATCAAGTGGTGTAGGTTTGACAATTGATGCTTTGTCATTGCTTGATAAGTTGGATCAACGTCTCCCTCGTCCTAGCAATGCTATTGGGAAAGAGTTGGTATCAATTATAAGGATTGCATGTCATTGCTTAACTGAGAGCCCGCGTCGTCGCCCTACAATGGAAGATGTTTGCAAGGAGATTGTAATGTCAAAGTGA 3954 0.3619 MLQRMKLCLVLFLSVFVMAMSVSPLTAANNQRREANALLKWKQSFDNQSKALLSSWIGNSPCSWEGITCDHESKSISQVNLTNFGLKGTLQSLNFSSLPKIRTLVLKNNSLHGIVPYHIGVMSNLNTLDLSYNNLSGTILNTIGNLSKLSYLGLNNNNLFGIIPSEITQLIGLSVWFMGFNSELSGPLPQEIGKMRNLTILDSPWCNLTGTIPVSIEKITNLSHMDVGGNKLYGNIPSEIGKLVNLEILSFYNNSLSGSIPREIGNLVNLEKLILDFNSLSGPIPREIFKLVNLEILTIGNNGLSGSISREIGNLVKLQILFLEHNILSGFIPREIGSLKQLYELDLSNNHLSGPIPSTIGNLSSMKFLYLYHNDFTGIIPTEVGKLSSLLTIQLLDNNLSGPIPPSIGNLTNLNSILLSQNNLSGSIPPSLGNLVNLDSIDLSQNNLSGPIPPSIGNLINLNFILLSQNNLSGTIPPSIGNLINLNSILLSQNNLSGTIPSSIGNLTNLNSIMLNQNNLSGPIPPSIGNLVNLNSIELSQNNLSGTIPPSIGNLVNLNSIELSQNNLSGPIPPSIGNLVNLNSIDLFQNILSGPIPPSIGNLVNLDSIDLSQNNLSGSIPSTIGNLTKLTGLYLPSNQFSGNFPNEMNMIPNLKNLQLSYNNFIGHLPHNICAGGNLEQFTAIFNQFTGPIPKSLYNCSSLVRVRLENNQLTGNITESFGVYPHLDYMELSHNGFYGHLSSNWGKCKNLTSLKISNNNLTGSIPPQLADAVNLGELNLSSNHLTGNIPKEFENLSLLYKLSISNNHLSGEVPAQIASLRELTALELATNNFSGFIPESLARLSKLLMLNLSKNKFEGSIPVEFGKLNVIENLDLSENFLNGTIPAMFGQLNSLETLNLSHNNLSGTIPLKYGEMLSLTNVDISYNQLEGPVPSISAFQNASFEELRNNKGLCGNVFGLEPCSTPGDKFHNHKNNTIFVLVLPITLGTLFLALFAYGLAYHICRTSRENKAPEESPTENLFTIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKIHSLQNGEMSNLKAFESEIKALTEIRHRNILKLYGYCSHPLHSFLVYEFLENGSVDKILKEDELATTFDWKRRVNAIKDVANALCYMHNDCSPPIVHRDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTAFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTMEILFGKHPGDTVSTLLQSSGVGLTIDALSLLDKLDQRLPRPSNAIGKELVSIIRIACHCLTESPRRRPTMEDVCKEIVMSK 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi139g00003 1317 SUPERFAMILY Protein kinase-like (PK-like) 1020 1312 IPR011009 -
Vivi139g00003 1317 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 500 597 - -
Vivi139g00003 1317 FunFam MDIS1-interacting receptor like kinase 2 1121 1317 - -
Vivi139g00003 1317 SUPERFAMILY RNI-like 345 664 - -
Vivi139g00003 1317 FunFam Leucine-rich repeat receptor protein kinase EMS1 598 677 - -
Vivi139g00003 1317 Gene3D Phosphorylase Kinase; domain 1 1003 1120 - -
Vivi139g00003 1317 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Vivi139g00003 1317 Pfam Leucine rich repeat 820 878 IPR001611 GO:0005515
Vivi139g00003 1317 Gene3D Ribonuclease Inhibitor 202 452 IPR032675 -
Vivi139g00003 1317 Gene3D Ribonuclease Inhibitor 650 964 IPR032675 -
Vivi139g00003 1317 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vivi139g00003 1317 ProSiteProfiles Protein kinase domain profile. 1042 1315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi139g00003 1317 Gene3D Transferase(Phosphotransferase) domain 1 1121 1317 - -
Vivi139g00003 1317 SMART LRR_sd22_2 507 533 - -
Vivi139g00003 1317 SMART LRR_sd22_2 435 461 - -
Vivi139g00003 1317 SMART LRR_sd22_2 555 581 - -
Vivi139g00003 1317 SMART LRR_sd22_2 122 148 - -
Vivi139g00003 1317 SMART LRR_sd22_2 291 317 - -
Vivi139g00003 1317 SMART LRR_sd22_2 603 629 - -
Vivi139g00003 1317 SMART LRR_sd22_2 339 365 - -
Vivi139g00003 1317 SMART LRR_sd22_2 243 269 - -
Vivi139g00003 1317 FunFam Leucine-rich repeat receptor-like protein kinase TDR 180 405 - -
Vivi139g00003 1317 FunFam Uncharacterized protein 678 971 - -
Vivi139g00003 1317 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Vivi139g00003 1317 Pfam Protein kinase domain 1043 1312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi139g00003 1317 SUPERFAMILY L domain-like 60 390 - -
Vivi139g00003 1317 PANTHER LEUCINE RICH REPEAT KINASE 2 95 502 - -
Vivi139g00003 1317 FunFam Nuclear pore complex protein NUP107 31 179 - -
Vivi139g00003 1317 FunFam Leucine-rich repeat receptor protein kinase MSP1 1004 1120 - -
Vivi139g00003 1317 SMART LRR_typ_2 339 363 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 555 579 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 459 483 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 507 531 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 891 915 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 267 291 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 122 145 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 651 675 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 411 435 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 243 266 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 843 867 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 146 170 IPR003591 -
Vivi139g00003 1317 SMART LRR_typ_2 603 627 IPR003591 -
Vivi139g00003 1317 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 406 499 - -
Vivi139g00003 1317 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1166 1178 IPR008266 GO:0004672|GO:0006468
Vivi139g00003 1317 ProSitePatterns Protein kinases ATP-binding region signature. 1048 1071 IPR017441 GO:0005524
Vivi139g00003 1317 PRINTS Leucine-rich repeat signature 342 355 - -
Vivi139g00003 1317 PRINTS Leucine-rich repeat signature 891 904 - -
Vivi139g00003 1317 Gene3D Ribonuclease Inhibitor 453 649 IPR032675 -
Vivi139g00003 1317 SUPERFAMILY RNI-like 596 935 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi139g00003 479 950 Receptor kinase-like Gene Family AT4G08850 33.333 3.35e-64 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi139g00003 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi139g00003 - - gmx:100793419 1300.8