Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1395g00002 ATGGTTGATGTTCTAAGCCCTTTCACAATCCCATCTCCTCCTCCACCATCTCCTTTATCAAACCAAAACAACACCATACCCATGTTATACTATACTCTAGTAGTGATGGGAGTTGCAGCCTTAGTTCTAGCAATTTACAACATCATCATCATCAAACGTTGCAATAGAAACAACCACAATAATCAACCACAACCCACAAGAGCAAATCTTGGTAATAGGAGCTTTGAACACCAACAAAGAAACTTGCTTTCAAGCTTCAAGTATAGGAAAGAAGTGGTTACAAAAGAAGAAGAAAAGGGTGATGATGAATATGAATGTTCTGTTTGTTTATCTGTTTATGAAGAAGGAGAAGAAGTTAGGAAGCTACCAAGGTGTAAACATAGTTTTCATGCTCTTTGTATAGATATGTGGCTTTATTCTCATTTTGATTGTCCAATTTGTAGAACACCTGTTGGTTCTTTTTGTGATGGGAGGATTGAATCTGGTGGCAGCATCTCTGTTTGA 504 0.375 MVDVLSPFTIPSPPPPSPLSNQNNTIPMLYYTLVVMGVAALVLAIYNIIIIKRCNRNNHNNQPQPTRANLGNRSFEHQQRNLLSSFKYRKEVVTKEEEKGDDEYECSVCLSVYEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPICRTPVGSFCDGRIESGGSISV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1395g00002 167 SMART ring_2 106 147 IPR001841 -
Vivi1395g00002 167 SUPERFAMILY RING/U-box 92 153 - -
Vivi1395g00002 167 FunFam RING-H2 finger protein ATL1 63 153 - -
Vivi1395g00002 167 CDD RING-H2_EL5-like 105 148 - -
Vivi1395g00002 167 Pfam Ring finger domain 105 148 IPR001841 -
Vivi1395g00002 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 151 IPR044675 -
Vivi1395g00002 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Vivi1395g00002 167 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1395g00002 20 151 C3H Transcription Factor Family AT1G04360 31.724 1.02e-19 82.8