Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1394g00002 ATGATGTTATCTAGAACAATGAATAGAGAGATTGAAGTTCTGTCTCCAGCTTTGTATAGTGAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCTAAATGGACTCAAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCAGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAGCAGTATAGGGAGCTTGAAGAAGATGTTTGTGTTATTGAAGCAGGTTTGATACCGGTTCCGGGTTATACAACTAGTTCTTTCACATTGGATTGGGCTAATGATGAAGGCTATGAGGAGTTCAAGCAGTTTTGCAGTGTTGGTGGGAAAAGAAGTGGTTCGACTCGACCGTCTGAGCAGGAAAGGAAGAAAGGTGTGCCGTGGACTGAAGAGGAGCATAGGCAATTTCTGCTGGGTCTGAAGAAGTATGGTAAGGGGGACTGGAGAAACATCTCTCGGAATTTCGTGACAACAAGGACACCGACTCAAGTTGCAAGTCATGCTCAGAAGTATTTCATAAGGCAAGTTTCAGGAGGGAAGGATAAAAGGAGATCCAGTATCCATGACATCACAGTGGTCAATCTCCAAGAAACAAAGTCTCCTTCATCAGAGCCTTCTCTGGACGATTCGGTTAAAGCTGCGAATCAACCGCAGAATCATAAACCGTTTGGTATGGTTAAGCAGGAACATGACTGGAAATTGCAAGACGAGGAGGGTATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTCGTGGCACCATTGTGTGGGATTTCTTCACACGAATCGAAATCACCAAGGCGTAATGCACTTCGCAGCACACACCATGGTTACCAGTTTTCACCGTTCGAAACTATTTTACAAATGCAATCTATGCAGAATCAATGA 933 0.4223 MMLSRTMNREIEVLSPALYSENSNWLFQENNGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWANDEGYEEFKQFCSVGGKRSGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSEPSLDDSVKAANQPQNHKPFGMVKQEHDWKLQDEEGMPFVFNSTKGNMFVAPLCGISSHESKSPRRNALRSTHHGYQFSPFETILQMQSMQNQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1394g00002 310 CDD SANT 141 186 IPR001005 -
Vivi1394g00002 310 MobiDBLite consensus disorder prediction 210 231 - -
Vivi1394g00002 310 CDD SANT 34 80 IPR001005 -
Vivi1394g00002 310 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Vivi1394g00002 310 FunFam transcription factor MYB1R1 140 191 - -
Vivi1394g00002 310 MobiDBLite consensus disorder prediction 210 237 - -
Vivi1394g00002 310 Gene3D - 27 94 - -
Vivi1394g00002 310 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Vivi1394g00002 310 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Vivi1394g00002 310 FunFam Transcription factor SRM1 27 94 - -
Vivi1394g00002 310 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Vivi1394g00002 310 SMART sant 31 83 IPR001005 -
Vivi1394g00002 310 SMART sant 138 188 IPR001005 -
Vivi1394g00002 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Vivi1394g00002 310 Gene3D - 140 190 - -
Vivi1394g00002 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 250 IPR043363 -
Vivi1394g00002 310 MobiDBLite consensus disorder prediction 123 142 - -
Vivi1394g00002 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Vivi1394g00002 310 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Vivi1394g00002 310 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Vivi1394g00002 310 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1394g00002 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1394g00002 - - var:108329798 469.544