Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1393g00003 ATGTCTCTTGAAAAGATGAGGAGGAACTGCAACTTAGAACTATGCCTTTTTCCTCAATATGTTTCCGATAGCAATCACAATCAAAACCATCACATGGTTGAAGAAGAAGCAGATAATGATAAGAGTTCAATGCAAAATCAGCAACAGCCACTGACTATTTTCTATGATGGCAAGATGTGTGTTACTCATGTCACAGAATTTCAGGCCAAATCAATCTTAATGATGGCAAATAAAAAAGTGGAAGAAATAGTAAACACACCAACAGGGTCAAAGGCACCAACACCAACAATAGTAGAATCCCCTCAGCAATCGTGTAGTCCTGGTCCTGGTCTTTCAATGAAAAGATCTTTGCAACGGTTTCTACAAAAGAGAAAAAATAGGATTCAACAAGCTTCTCCATACAATCATTAA 411 0.3747 MSLEKMRRNCNLELCLFPQYVSDSNHNQNHHMVEEEADNDKSSMQNQQQPLTIFYDGKMCVTHVTEFQAKSILMMANKKVEEIVNTPTGSKAPTPTIVESPQQSCSPGPGLSMKRSLQRFLQKRKNRIQQASPYNH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1393g00003 136 Pfam tify domain 47 77 IPR010399 -
Vivi1393g00003 136 MobiDBLite consensus disorder prediction 85 111 - -
Vivi1393g00003 136 Pfam Jas motif 114 134 IPR018467 -
Vivi1393g00003 136 ProSiteProfiles Tify domain profile. 44 78 IPR010399 -
Vivi1393g00003 136 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 135 IPR040390 -
Vivi1393g00003 136 SMART tify_2 44 78 IPR010399 -
Vivi1393g00003 136 MobiDBLite consensus disorder prediction 85 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1393g00003 5 134 Tify Gene Family AT1G30135 41.304 5.09e-22 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi1393g00003 Jas_motif 4.6e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1393g00003 - - vvo:131641562 189.889