Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1393g00002 ATGAGGAGGAATTGCAACTTGGAACTCTGCCTTTATCCTCCATACGTTTCTCATAGAAATCACATGGTTGAAGAAAAAGATAGTGATATGAGTTCAATGCAAAATGAGCAACAGCCACTGACCATTTTTTATGATGGCAAGATGTGTGTTATTGATGTCACTGAGTTTCAGGCCAAATCCATCTTAATGTTGGCAAATGAAAAAGTGGAAGAAATAGTGAAGACACCAAAAGGATCAGAGCCATCAACACCTACAACAGTAGAATCTCCTCATCAATTGTATAGCCCTGGTCATGCTCTTTCAATGAAAATGTCTTTGCAACGGTTTCTACAAAAGAGAAAAATTAGGATCCAACAAGCTTCTCCATATAATCATTAG 378 0.3757 MRRNCNLELCLYPPYVSHRNHMVEEKDSDMSSMQNEQQPLTIFYDGKMCVIDVTEFQAKSILMLANEKVEEIVKTPKGSEPSTPTTVESPHQLYSPGHALSMKMSLQRFLQKRKIRIQQASPYNH 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1393g00002 125 Pfam Jas motif 103 123 IPR018467 -
Vivi1393g00002 125 SMART tify_2 33 67 IPR010399 -
Vivi1393g00002 125 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 31 124 IPR040390 -
Vivi1393g00002 125 Pfam tify domain 36 66 IPR010399 -
Vivi1393g00002 125 ProSiteProfiles Tify domain profile. 33 67 IPR010399 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1393g00002 1 123 Tify Gene Family AT1G30135 42.969 6.79e-23 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi1393g00002 tify 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1393g00002 - - vvo:131641562 220.32