Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1393g00001 ATGAAGAGGAATTGCAACTTGGAACTCTGCCTTTATCCTCCATACACGTTTGAAGAAGAAAAAGATAGTGATAAGAGTTCAATGCAAAATGAGCAACAGCCACTGACCATTTTCTATGATGGCAAGATGTGTGTTATTGATGTCACCGAGTTTCAGGCCAAATCAGTCTTAACGATGGCAAATAAAAAAGTGGAAGAAATAGTGAAGACACCAACAGGATCAGAGCCATCAACACCAACAACAGTAGAATCTCCTCATCAATTGTATAGCCCTGGTCATGCTCTTTCAATGAAAATGTCTTTGCAACGGTTTCTACAAAAGAGAAAAAATAGGATCCAACAAGCTTCTCCATATAATCATTAG 363 0.3829 MKRNCNLELCLYPPYTFEEEKDSDKSSMQNEQQPLTIFYDGKMCVIDVTEFQAKSVLTMANKKVEEIVKTPTGSEPSTPTTVESPHQLYSPGHALSMKMSLQRFLQKRKNRIQQASPYNH 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1393g00001 120 SMART tify_2 28 62 IPR010399 -
Vivi1393g00001 120 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 119 IPR040390 -
Vivi1393g00001 120 ProSiteProfiles Tify domain profile. 28 62 IPR010399 -
Vivi1393g00001 120 Pfam Jas motif 98 118 IPR018467 -
Vivi1393g00001 120 Pfam tify domain 31 61 IPR010399 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1393g00001 1 119 Tify Gene Family AT1G30135 40.458 1.75e-21 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi1393g00001 tify 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1393g00001 - - vvo:131641562 240.736