Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1389g00003 ATGGCTAGGATCAAGCCTCAGGCTCTGTTACAGCAAAGCAAAAGGAAGAAAGGACCTTCTCGTATTAGCGCGGCTACTATTATATTTTATGCTTTGGTTCTTGTGTTGGTTGGGTTTTTCCTTTTGGCTACATACAGACATTGGTCTAACAGATCAAGATTGCAATTAGAAAACAACTCGACAATATCTGACGAGGGTGAAAATAGTTTTGTGGACTCAAAGAAATCTGAGCTACCTGGATATGCTGTTTTAAATACCTCTAAAGGGTCGATAATAGTAGAACTGTACAAGGAAAGTGCTCCTGAAGCTGTTGATGAATTTATCGACTTATGTCAAAAAGGGCACTTCAAAGGGATGCTTTTTCAGCGTGTAATTAAGCACTATGTTATTCAGGCAGGGGATGGCCAAGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTACAAGTATGAAACACGAAGCGTTCATGCTTGGAACATCGAAGGGCAAACACACCAACAAAGTATTTGACCTCTTCATTACAACTGCACCGATCCCAGATCTTAACGAGAAGCTTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGACGTTGTTCAGGAAATTGAAGAAGTGGATACTGATGAACATTACACTCCTAAAATCTCTATTGGAATACTTGACGTGACTCTCAAACAAAAGATCTGA 693 0.4069 MARIKPQALLQQSKRKKGPSRISAATIIFYALVLVLVGFFLLATYRHWSNRSRLQLENNSTISDEGENSFVDSKKSELPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFQRVIKHYVIQAGDGQGTGAADWNLRGKQPTSMKHEAFMLGTSKGKHTNKVFDLFITTAPIPDLNEKLIVFGQVIKGEDVVQEIEEVDTDEHYTPKISIGILDVTLKQKI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1389g00003 230 SUPERFAMILY Cyclophilin-like 79 226 IPR029000 -
Vivi1389g00003 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
Vivi1389g00003 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 CDD cyclophilin 83 223 - -
Vivi1389g00003 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 78 226 IPR002130 GO:0000413|GO:0003755
Vivi1389g00003 230 Gene3D - 67 230 IPR029000 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1389g00003 80 226 U-box Gene Family AT5G67530 32.468 1.63e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1389g00003 - - gmx:100781538 380.563