LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1389g00002	ATGAAAAACAAACAAGAAGAGAAAATAATAGCCATAGAGAAATCCATAAACATGAGTGAAGAATGTGTTGGAAACACTATTGCTACTACCTCTACTACACCATTAAACTGGTGGTATCTTCAAGCAACAAACTCTCTTTCTTCTAATTGGAATGATGGTAATAAACTTGCATGGAACAATCAAATGAATAATCCGAATTCTTCGTCTTCTTGTGATGATCAAGATATATCGGTTTCTTCGAATTCTTTCACTAATGCTTCCAACCATTCGTCTCTCACCGTTGAATCCTCTCGAAGAATACTTGAGTCGCATGCACCTTCCTCTAATGATTTCATGGCTGAACATGCTTCAGATAACCAACTTTGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTACAAAACAACCAAGAAATTGGAGAAAATTTCTTGGATGGACTTTCATCAAAAACCATGTTTGATGAACCAGCATGTGACTATTTGAAGAAACTTGATACAACAAATTGGGAATATAGTGGTTCAACTTCATTCAACACAAGTTTTGAAAAGCACTTAAATGGCTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAACTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACTTATCCAATAATTTGAATTCCAATTCCTCCAATATAGATAATCATCACTTTGAATCTGACCCTAATTGTCATCTCAAACAATTACCTTTTGGAGATTCTATTGGAGGAGTAGGTAATAAAATGTTCTCTAATTGCCATGATGTTCAAGACATGAATAAGGTTAAGCAAGAATATCATCATCAACATCAACATGCAAATCATGAAGTATTTGGAAAATCATTTATGAATCCTAATGGATATCTTGATGGATTTAATAGTAGTCTTAATCCTGTGGGAGAAAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACCAAAAGTTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCACTTATTGGAATCCATGCACAAAGACCTAGCATGAAATACTCAAATTTATCTGAGTCAAGAAAGCAAGGACTTCATACACCATCACATATGAAAACTAGTAGCGGAAGAGAGGGGACAACGCGCGAAGTAAAGAAGAAAAGATCTGAAGAATCATCGGAAGCAAACTTGAAGAAGCCAAAACAAGATACATCAACAACTAATTCATCTTCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGAAAAGATCACAGCTCTTCAACAAATTGTGTCTCCTTTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAGCAAGTCCAGTTACTGAGTAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAATGTACTTCGATAGAAAAGATAAGGAGGATGCGAAAATCGATCTTCGAAGCAGAGGTCTTTGTTTAGTTCCAACTTCATGTACTCCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTCTGTATAGGTAA	1623	0.3648	MKNKQEEKIIAIEKSINMSEECVGNTIATTSTTPLNWWYLQATNSLSSNWNDGNKLAWNNQMNNPNSSSSCDDQDISVSSNSFTNASNHSSLTVESSRRILESHAPSSNDFMAEHASDNQLWSHVLSGVGSNGELQNNQEIGENFLDGLSSKTMFDEPACDYLKKLDTTNWEYSGSTSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNLSNNLNSNSSNIDNHHFESDPNCHLKQLPFGDSIGGVGNKMFSNCHDVQDMNKVKQEYHHQHQHANHEVFGKSFMNPNGYLDGFNSSLNPVGENGKFYQGLPNISPCTKSFSDVISFNSRFGRPLIGIHAQRPSMKYSNLSESRKQGLHTPSHMKTSSGREGTTREVKKKRSEESSEANLKKPKQDTSTTNSSSSKVQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGMYFDRKDKEDAKIDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1389g00002	540	MobiDBLite	consensus disorder prediction	366	431	-	-
	Vivi1389g00002	540	MobiDBLite	consensus disorder prediction	366	388	-	-
	Vivi1389g00002	540	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	433	482	IPR036638	GO:0046983
	Vivi1389g00002	540	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	153	518	-	-
	Vivi1389g00002	540	MobiDBLite	consensus disorder prediction	412	429	-	-
	Vivi1389g00002	540	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	418	467	IPR011598	GO:0046983
	Vivi1389g00002	540	CDD	bHLH_AtbHLH_like	433	475	IPR045239	-
	Vivi1389g00002	540	MobiDBLite	consensus disorder prediction	389	411	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1389g00002	338	540	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G31050	43.478	2.92e-35	135

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1389g00002	-		-	vvo:131641542	1071.23