Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1389g00001 ATGAAAAACAAACAAGAAGAGAAAATAATAGCCATAGAGAAATCCATAAACATGAGTGAAGAATGTGTTGGAAACACTATTGCTACTACCTCTACTACACCATTAAACTGGTGGTATCTTCAAGCAACAAACTCTCTTTCTTCTAATTGGAATGATGGTAATAAACTTGCATGGAACAATCAAATGAATAATCCGAATTCTTCGTCTTCTTGTGATGATCAAGATATATCGGTTTCTTCGAATTCTTTCACTAATGCTTCCAACCATTCGTCTCTCACCGTTGAATCCTCTCGAAGAATACTTGAGTCGCATGCACCTTCCTCTAATGATTTCATGGCTGAACATGCTTCAGATAACCAACTTTGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTACAAAACAACCAAGAAATTGGAGAAAATTTCTTGGATGGACTTTCATCAAAAACCATGTTTGATGAACCAGCATGTGACTATTTGAAGAAACTTGATACAACAAATTGGGAATATAGTGGTTCAACTTCATTCAACACAAGTTTTGAAAAGCACTTAAATGGCTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAACTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACTTATCCAATAATTTGAATTCCAATTCCTCCAATATAGATAATCATCACTTTGAATCTGACCCTAATTGTCATCTCAAACAATTACCTTTTGGAGATTCTATTGGAGGAGTAGGTAATAAAATGTTCTCTAATTGCCATGATGTTCAAGACATGAATAAGGTTAAGCAAGAATATCATCATCAACATCAACATGCAAATCATGAAGTATTTGGAAAATCATTTATGAATCCTAATGGATATCTTGATGGATTTAATAGTAGTCTTAATCCTGTGGGAGAAAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACCAAAAGTTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCACTTATTGGAATCCATGCACAAAGACCTAGCATGAAATACTCAAATTTATCTGAGTCAAGAAAGCAAGGACTTCATACACCATCACATATGAAAACTAGTAGCGGAAGAGAGGGGACAACGCGCGAAGTAAAGAAGAAAAGATCTGAAGAATCATCGGAAGCAAACTTGAAGAAGCCAAAACAAGATACATCAACAACTAATTCATCTTCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGAAAAGATCACAGCTCTTCAACAAATTGTGTCTCCTTTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAGCAAGTCCAGTTACTGAGTAACCCTTACTTGAAGGCAAATTCACACAAGTTAATGCAGGATCCAAGGGGAATGTACTTCGATAGAAAAGATAAGGAGGATGCGAAAATCGATCTTCGAAGCAGAGGTCTTTGTTTAGTTCCAACTTCATGTACTCCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTCTGTATAGGTAA 1632 0.3646 MKNKQEEKIIAIEKSINMSEECVGNTIATTSTTPLNWWYLQATNSLSSNWNDGNKLAWNNQMNNPNSSSSCDDQDISVSSNSFTNASNHSSLTVESSRRILESHAPSSNDFMAEHASDNQLWSHVLSGVGSNGELQNNQEIGENFLDGLSSKTMFDEPACDYLKKLDTTNWEYSGSTSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNLSNNLNSNSSNIDNHHFESDPNCHLKQLPFGDSIGGVGNKMFSNCHDVQDMNKVKQEYHHQHQHANHEVFGKSFMNPNGYLDGFNSSLNPVGENGKFYQGLPNISPCTKSFSDVISFNSRFGRPLIGIHAQRPSMKYSNLSESRKQGLHTPSHMKTSSGREGTTREVKKKRSEESSEANLKKPKQDTSTTNSSSSKVQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKLMQDPRGMYFDRKDKEDAKIDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1389g00001 543 MobiDBLite consensus disorder prediction 366 431 - -
Vivi1389g00001 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 433 481 IPR036638 GO:0046983
Vivi1389g00001 543 MobiDBLite consensus disorder prediction 366 388 - -
Vivi1389g00001 543 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 153 521 - -
Vivi1389g00001 543 MobiDBLite consensus disorder prediction 412 429 - -
Vivi1389g00001 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 418 467 IPR011598 GO:0046983
Vivi1389g00001 543 CDD bHLH_AtbHLH_like 433 475 IPR045239 -
Vivi1389g00001 543 MobiDBLite consensus disorder prediction 389 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1389g00001 338 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 42.857 4.93e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1389g00001 - - vvo:131641542 1082.01