Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1385g00001 ATGCGCCTTCACGTACCAAATCAATACCCATCCGGTAGAAGTTTCTCGAACACAAAGAAATGGTTACAAATACACAACGAACGAATCTGCGTCCGAAAATCGAACTTCTCTGCGTCCAAATTCCGCAACCTTGCTTCCTTTCGCGATTTCATAACCAGGTGTAACGAGATCAAAATGAGGGGAAGAAGCTACAGTTACAGTCCGTCACCTCCAAGGTACGGTCGAAGGGAACGCAGTCCTAGTCCTAGGGGGCGTTACGGAGGAGGCCGATACAGAGGCCGAGATAGAGATTTGCCAACAAGTCTTCTGGTTCGGAATCTCCACAAAGATTGCAGGCCCGAGGATCTGCACGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATGTATACCTGCCTCGTGATTATTACACTGGGGAGCCAAGGGGATTTGGGTTTGTTCAGTTTGTGGATCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCCGAAGAAAACAGGAAGAAACCTCAAGAAATGAGAGCAAGAGAACGAGGAAGGTCATATGACTATAGGAGATCTCCGCGTCGTCGATCTCCTTCACCACGCTATGCACGGACATATTCTCCTAGTCCAGACTATTCCCCTTCTCCAAGACAAAGGCGATACTCCAGATATTCCAGGTCAATTTCACCAAGAGATGGGAGGTATAGAAGGGGATCATACTCCCCATCCCCTTATGCATCAAGAAGCCCCAGACGAAGTAGGAGTTACAGCAGAAGCATAAGTCCAGGATACTCTAGATGA 825 0.4776 MRLHVPNQYPSGRSFSNTKKWLQIHNERICVRKSNFSASKFRNLASFRDFITRCNEIKMRGRSYSYSPSPPRYGRRERSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSPSPRYARTYSPSPDYSPSPRQRRYSRYSRSISPRDGRYRRGSYSPSPYASRSPRRSRSYSRSISPGYSR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1385g00001 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Vivi1385g00001 274 Gene3D - 95 267 IPR012677 -
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 210 231 - -
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 76 94 - -
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 180 274 - -
Vivi1385g00001 274 SUPERFAMILY RNA-binding domain, RBD 100 205 IPR035979 GO:0003676
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 62 94 - -
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 250 274 - -
Vivi1385g00001 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Vivi1385g00001 274 MobiDBLite consensus disorder prediction 180 203 - -
Vivi1385g00001 274 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 99 264 - -
Vivi1385g00001 274 SMART rrm1_1 101 174 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1385g00001 28 163 Eukaryotic Initiation Factors Gene Family AT3G11400 37.063 1.11e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1385g00001 K12900 - gmx:100816913 201.06