Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1375g00002 ATGAAGCTTCCGCGAAAAACCAAAGCGACGGAACTGCCTCCGGCGACAGAACCGCCACCGGCGACGGAACCACCGTCGGTTCCGAAGCGGCGAGGTCGACCGCGGAAGCAGAGAAGAACAGAGGATGGAACGGTTACGGGTGTTTCGAAGAAGCCTAAGCCGATTGTATTGATTGGACGATACGTTTTGAAGCAGTTTCCAAAACGTTCTCGAATCGGAAAAGTTGTAAGCTACAAGATTGGTTTATATAGAGTCGAGTTTGAAAACCGTGTTTCTGAGGATTTGGATAGTAGTGTTATTAGGAAGATTCTTCTGGAGGATTGTGAGTTCGATGAAGATTTGATTCGGAGGAAGAAGAAATTGGATGAAAGGTTGTTGCAGAAGATCGATAAGGCGAAAGAGAAGGAGAAGAAATTGTCTGAATTGCGTGCGGAAAACAAAAAGGAACAAGATGAAACGGGAGATGTAACGGACAATTCCATGGATTTAGGTTTGGAAGCTGAAAAACGGATTGAATTGCCAACTTTAGACTTGCCGCCGAAGTTGCAGTTACCACCATCTTCGGGAACTATTGGTGTGCCGGAGAATTATGTTTCACACCTGTTTTCAGTTTATGCATTTCTAAGATCATTCAGCTTTCGATTGTTTCTGAGTCCGTTTACTTTAGATGAATTCGTTGGTGCTCTTAACTGTCGAGTATCAAATACATTGCTTGATGCTGTTCATGTTTCTTTGATGCGTGCTTTGAAACGTCATCTGGAAAATCTTTCGGCCGAGGGCTCGAAGATTGCATCAAAATGCCTTAGGTACAGTGATTGGAGCTTGCTTGATGCATTGACTTGGCCTGTTTTCATAATTCAATATTTAACAGTTAATGGATACACCAAGGGGTCTGAGGGGAAAGGATTTTATACTGAGATTTTATGTGGTGAGTATTATTCATTGCCCGCAAGTAGGAAGTTAATGATATTGCAAATTCTCTGCGAAGAGGTTTTGGAGTCCGAGGAGCTGAAAGCTGAAATGAACATGCGTGAAGTATTAGAGGTCGGGAAGAATTATGATGATGAGGACATTCCTCTTGCAGAAAATGGACCACAAAGAGTCCATCAACGACATGCCAAAACTGCTGATTGCCAGGATGAAGAATCTCTGAAGTCTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGACGAGGTTGACGATAATGGAGATGAATGTCGCCTCTGTGGCATGGAGGGGACCTTGCTTTGCTGTGATGGATGTCCCGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTACATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATAAATATGACTGGGCCAACAATTGCACGAGGAACATCTCTTAAAGGGGCTGAAGTATTTGGAACGGATTTATACGGGCAGCTTTTCATGGGTACTTGCGACCACCTACTTGTGCTCAACGACAGCAGCAGTGAGTTTTGTCTTAAATACTACAATCAGAATGACATTCCTGAAGTCATCCGAGTGCTTTATGCTTCCATGCAACATAGACATGTATACTCCAGTATTTGCACAGCGATATTACAATATTGGAATATTTCAGAAAGCTTCTTACTCCCATGTTGTCCAAACGGAGTAGCTATAAGCTCAGAATATTCAAAGATAGATGAAAACACCTCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTGTTAGTTTCGGTAAACCAGGAAATGGTCTAGCATTTGTTAATGGGATTTGCGATGATAATATGGTCCCATCCCTTGATGCTTCGTTGGTTACCAGTAGTCCCACTAGTGAAGCCAGTGACAATACTATAACTAAGGAGTCCCCTAGCACGGATATGAAACTTCAGAAGGAAACTGTGACGAATTCTGTTCTTACTGTTAACCACCTGTCTGATACAAATTCCCCAAATGCTGATAAAAGATCAACTGCGCCTATTCTTGCCAAGTCCTCCTCGGTAAGCAACCAATTTATTAATCAAGGGCATGCAAATGACACGGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGATCAAACTGGTTTTGGAAAGAGCAAAGGAAATATAACTAATGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAAGGTCACGTGACTGACTTGAGGAGAGCTACATCTGAAAACGCTAACTTGATGGAAAAAGCATTCTCACTAACAGTTTCACGCTTCGTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTCCTAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATATGTGCCACCAAAAGTGCCACCAGAATCTTTTCGGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTACCATCGCAACATATGTCATATATATAGAGGAAAGCTTACATGGTTTAATAGATGGGCCCTTTCTTAATGGAAACTATAGAAGGCAATGGCGTGAACAAATGGAAAGGGCCACATCATTTAATAACATAAAGCCCCTTTTACTTAAACTAGAAGAGAACATTCGCTCAATTACTTTTTGTGGCAAATGGTTTAAGCTGACTGATGAGTGGTTGGTTGAATCTCTTACAATACAAAGTGCTACATCTATTGTTGGAACAACACGGACACGTGCATCATGCGACATATGTAGAAAACAACCTATCAAATATGCAGTTGACCCTCTCCGTGAGAACTTTGGCTGGCGGAATAGCAAATTTACCAAATCTGTGTTTCAGAAAGCTGCATTGCCAAAATTCATGGTCAGAAAAGCAGCTCGGCAAGGTGGTTCAAAGAAAATTTTGAGTATTATCTATCCTGATTCTGGTGTCTCTGAAATTCCTAAGAGAAGCCGACAGATGATTTGGAGAGCTGCCGTTCAAATGTGTAGGAATGCATCACAACTTGCACTGCAGGTCCGGTATCTGGATTTTCATATCAGATGGACTGATCTGATTCGGCCGGAATATAACCTCCAGGATGGAAAAGTTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAAATATTTGTGACAAAAAACGTGAAGAGGGAAAAACATTATATGATATAGATTTTGGGAGCCAAAAGCATATTCCTTCTCGGGTATTGAAGAATGCTAAAATTGATCAAGGGCCAAAAGGAGGGAAGTACTGGTTTTTCGAAACACGAATTCCTTTACATATGATAAAAGAGTATGAAGTAAGCAATGAAAAAGAGCCATCTTATAAAGATAACTTGAATATTGCATCTCAATGGCACAAAAGACGGTTGAATGCTATCTTCACGGACATATTTTCTTACCTCACTCACAAGAGAGACAATTTAGACATGCCATCATGTTCTGTATGTAAGCAGGATGTTTTTTTTAGGAATGCTCTCAAGTGCAGCACATGTAAAGGTTATTGTCATGAGGGTTGTTCAATAAATCCAACTTTCCCTACATATACAGACGTTGAGTTCTTGACCACATGCAAACAATGTTATCATACCAGATTACTTGCTCAAAAAGAGACCAATAACAAATCTCTAACCAGTCCCTTATTGTCAAAAGGACATGAACACAGCTCCTTGCCAATTTTGAAGGGACTAAAGCCTAAATGTGATAACCAAATACTGTTATCTACCAGGGCAAAGGATTGTCGATCTGACATGGAAAAAGTTGCTTCGTATTCCTCTCTGGAATCAAAAAGTAGTCGCAAAAAATCTTGGGGTATTATATGGAAAAAGAATAACAGTGAAGATTCAGGCCTTGATTTCAGGCTAAAAAAGATAATTCTGAAGCGGCGTACAAGCTTGCCTCAATTGGAACCTGTTTGTCAGGTGTGCCAAAATCCATATAGGCCCGATCTAATGTATATAGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTTGGCTTCAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTGCATGTCCTTACTCCCAGGCTTCCAAGAAACAAGACTCTGGAGCAGATTCTGGTTCTGGAACACTAGCTGATGCAAGCGCAAGTGAGCCTGATACGCCGATCTTTCTTGCAGAGGAGGTTTCTAAATGCAGAACACTAGGTAATGGAAGAGCAAGTGCGCCTGATACCCCGATCTTTCCTGCAGAGGTGGTTTCTAAAAGCAGAACACTAGCTGACGCAAGAGCAAGTGAGCGTGATACTCTGATCTTTCCTGCAGAGGAGGTTTCTAAACGCAAAACACTAGATGACGCAAGAGCAAGTGAGCCTGATACGCTGATCTTTCCTGCAGAGGATGTTTTTAAACGTAGAAAACTAGCTGACACAAGAGCAAGTGAGCCTGATACCCAGATCTTTCCTGTAGAGGAGGTTTCTGAACGCAGAACACTAGCTGACGCAAGAACAAGTGAGCCTGATACCCCGATCTTTCCTGCAGAGGAGGTTTCTAAACAAGAGAACAATCCTCTGTCATTTTTTCTTTCAAATGTCGAACTGATTGCAGAACCCAACTTTGAGGTCGATGCAGGAATTGAGTCTAACCTCGTCTCTCGGTCAGGCCTTCAGAAAATGCCAACTAGAAGCGCTTTTAAACCCGAGGGGAACAGTAATGGCTCTTTTGGAGGTGAAATTTCAACAAAGGATGAAGTGGATAATCTGCCTGCAGAGGTTTTCCCACCTTTTGTAGAACATGACTCTCTATCCGCTCACTACAATCTTCTGAATGACTCGGAAATTGTAGATAATGAATACACTGAGTTTGAATCCCTAATCGAGTCTAAACTTATGGACCTAGATTATGGGGAAACTTATGCACCCGGTGACTTGTCAGGATTTACCAAAGATTCTTGTACATTCGATGTTCCTGAAGAACTTCTTGCATCTACTAGTTTAAAGAACAACCAGGAACCTACAATTTCATCAAATCAAAATGTTCATAGTTGTACGGAATGTTCACAAACGGAACCAGCCCCGGATCTCAATTGTAAGGATTGTCCGAAGTGGATTCACAAAAAGTGTTCACGCTGGATTGAATCACCATCTATGCTTGAAGAAGAATGGAAGTGTGGTGATTGCAGGGATTGGTCGTAG 5268 0.4176 MKLPRKTKATELPPATEPPPATEPPSVPKRRGRPRKQRRTEDGTVTGVSKKPKPIVLIGRYVLKQFPKRSRIGKVVSYKIGLYRVEFENRVSEDLDSSVIRKILLEDCEFDEDLIRRKKKLDERLLQKIDKAKEKEKKLSELRAENKKEQDETGDVTDNSMDLGLEAEKRIELPTLDLPPKLQLPPSSGTIGVPENYVSHLFSVYAFLRSFSFRLFLSPFTLDEFVGALNCRVSNTLLDAVHVSLMRALKRHLENLSAEGSKIASKCLRYSDWSLLDALTWPVFIIQYLTVNGYTKGSEGKGFYTEILCGEYYSLPASRKLMILQILCEEVLESEELKAEMNMREVLEVGKNYDDEDIPLAENGPQRVHQRHAKTADCQDEESLKSVSKLDAVNLPGNSEDEVDDNGDECRLCGMEGTLLCCDGCPAVYHSRCIGVMKMYIPEGAWYCPECKINMTGPTIARGTSLKGAEVFGTDLYGQLFMGTCDHLLVLNDSSSEFCLKYYNQNDIPEVIRVLYASMQHRHVYSSICTAILQYWNISESFLLPCCPNGVAISSEYSKIDENTSAALLPHVVENDHKGVSFGKPGNGLAFVNGICDDNMVPSLDASLVTSSPTSEASDNTITKESPSTDMKLQKETVTNSVLTVNHLSDTNSPNADKRSTAPILAKSSSVSNQFINQGHANDTGLPMNLSLQTKGDQTGFGKSKGNITNDFVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSEDSRSEGHVTDLRRATSENANLMEKAFSLTVSRFVWPSSDKKLAEVPRERCGWCLSCKAPASSKKGCMLNHAAICATKSATRIFSGLAPVRSGEGISPTIATYVIYIEESLHGLIDGPFLNGNYRRQWREQMERATSFNNIKPLLLKLEENIRSITFCGKWFKLTDEWLVESLTIQSATSIVGTTRTRASCDICRKQPIKYAVDPLRENFGWRNSKFTKSVFQKAALPKFMVRKAARQGGSKKILSIIYPDSGVSEIPKRSRQMIWRAAVQMCRNASQLALQVRYLDFHIRWTDLIRPEYNLQDGKVQDTEVSAFRNANICDKKREEGKTLYDIDFGSQKHIPSRVLKNAKIDQGPKGGKYWFFETRIPLHMIKEYEVSNEKEPSYKDNLNIASQWHKRRLNAIFTDIFSYLTHKRDNLDMPSCSVCKQDVFFRNALKCSTCKGYCHEGCSINPTFPTYTDVEFLTTCKQCYHTRLLAQKETNNKSLTSPLLSKGHEHSSLPILKGLKPKCDNQILLSTRAKDCRSDMEKVASYSSLESKSSRKKSWGIIWKKNNSEDSGLDFRLKKIILKRRTSLPQLEPVCQVCQNPYRPDLMYIGCETCTRWYHAEALELEESKIFSVLGFKCCRCRKIKSPACPYSQASKKQDSGADSGSGTLADASASEPDTPIFLAEEVSKCRTLGNGRASAPDTPIFPAEVVSKSRTLADARASERDTLIFPAEEVSKRKTLDDARASEPDTLIFPAEDVFKRRKLADTRASEPDTQIFPVEEVSERRTLADARTSEPDTPIFPAEEVSKQENNPLSFFLSNVELIAEPNFEVDAGIESNLVSRSGLQKMPTRSAFKPEGNSNGSFGGEISTKDEVDNLPAEVFPPFVEHDSLSAHYNLLNDSEIVDNEYTEFESLIESKLMDLDYGETYAPGDLSGFTKDSCTFDVPEELLASTSLKNNQEPTISSNQNVHSCTECSQTEPAPDLNCKDCPKWIHKKCSRWIESPSMLEEEWKCGDCRDWS 1755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1375g00002 1755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1318 1394 IPR013083 -
Vivi1375g00002 1755 Pfam DDT domain 197 251 IPR018501 -
Vivi1375g00002 1755 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 13 27 - -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 1 49 - -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 140 155 - -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 1385 1407 - -
Vivi1375g00002 1755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 459 IPR013083 -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 1385 1410 - -
Vivi1375g00002 1755 Coils Coil 115 152 - -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 140 159 - -
Vivi1375g00002 1755 MobiDBLite consensus disorder prediction 609 632 - -
Vivi1375g00002 1755 SUPERFAMILY FYVE/PHD zinc finger 1326 1381 IPR011011 -
Vivi1375g00002 1755 Pfam PHD-finger 410 452 IPR019787 -
Vivi1375g00002 1755 SUPERFAMILY FYVE/PHD zinc finger 395 457 IPR011011 -
Vivi1375g00002 1755 CDD PHD_SF 1328 1375 - -
Vivi1375g00002 1755 ProSitePatterns Zinc finger PHD-type signature. 410 451 IPR019786 -
Vivi1375g00002 1755 ProSiteProfiles Zinc finger PHD-type profile. 407 454 IPR019787 -
Vivi1375g00002 1755 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 309 342 IPR028942 -
Vivi1375g00002 1755 PANTHER PHD FINGER FAMILY PROTEIN 51 1718 - -
Vivi1375g00002 1755 SMART testlast3 195 255 IPR018501 -
Vivi1375g00002 1755 SMART PHD_3 409 452 IPR001965 -
Vivi1375g00002 1755 SMART PHD_3 1706 1752 IPR001965 -
Vivi1375g00002 1755 SMART PHD_3 1169 1218 IPR001965 -
Vivi1375g00002 1755 SMART PHD_3 1328 1376 IPR001965 -
Vivi1375g00002 1755 SUPERFAMILY FYVE/PHD zinc finger 1695 1752 IPR011011 -
Vivi1375g00002 1755 CDD PHD_SF 1706 1751 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1375g00002 285 538 EF-hand Containing Proteins AT5G22760 45.985 1.08e-66 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi1375g00002 DDT 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1375g00002 - - vvo:131641498 3492.98