Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1373g00010 ATGGAGATGAGCTACCCGTCAGATGTTAATCGAGATGTCACCATGTGTTCTACGAGCGCAGTTAATATTTCAGACTCACACCAGAGTTTTGTGCAACAGCCTGTTTTTGTGAGTGGATGGATGTATGTGAATGAACATGAACAAATGTGTGGTCCATATATTAAGGAGCAGTTATACGAGGGGCTAACTTCAGGTTTCTTGCCATTCGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGGATTATTTCCAACAGTATCCTGACCATGTTTCCACCGGGTTTGCATACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACAATATACGGGCAAGATAGATCTTGTGAGCCTGCTGCTCTTATGGCTGTTAACCCAAATTCAAAGTCTGTTTCACAGTCAAATGTCAATGACTGCACTAAGGAATCAGATCACTTGAATTTGAATTCCGAGGCATTCAGGAGGATTATTTCTTGTCAGATGCCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTACGAAACATGGGCCACATTCCATTTCAGAATTGATTTCCTGGCATCACCATGGATATCTTGAAGATTCAACAGTGATCTCCCATTTTGACAATAAGTATGGAAACTTTGTGTTGTCGGCGGCTGTAAATGCATTGAAAGGAGATATATCTGGAACCATCTGTGGATCAGATTCCCAAAGCAACGGAGTAGGTGATGTGATGAACTTAAATTGTGAAATATCTGAAGACATTTCTTCACAATTGCACATGGGTGTAATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGGATTATTGGCGATATCATTTCAGAATTTGTTACTAAAAAGAAATGCAAAAACCAAAAGCTTAAGTCTTCTGATCGAACTTGCACGTTGGACAGTAAAATGATGAATAATAGTACTTCCATTCCTCCTAGTGAGCCTGCAGCTTCCCATTTTTTGGATGACCAGGCTTGCCATGAAATTTCCAGACAGTCTTCAATGAGTGTGAAGGCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATTCTGTTGTTCGTAAAGCACTTGTTGATTATTGCTTGCAAATCATGTGGAATGCAGTGTTTTTTGACACGGTAAAAGAGTACTTATTTTCCTGGAGGAAGAGGAAATATTGGTCTCAACCTAAGCCTCCACCAACTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGTTGATGCTGATATCCAGTCTGGCGTGATGGCGACAGAAAGAGATTGTCATCCTGAGTTGTTTTTATCTACTAATAACTTCGAAAGCCGAAACATAACCGAAAGTCAAAGAGTTTCATGCAGTTATCCTAATTCTAAAGTTTTGACATGTATTCTTGAACGTGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAAGTAATTCCTTCCTTAGAAATAGATAAATTCAGCGAGGTTGATGATAGTAACTGCCGTATCTCAGAGATGCTTACCAGTAAAACATCTGTTAAAGAAATTCTAAATGACAAGTCTGTCGATCCTGTGAAAAATAGAGACTCACTTTGGGTGTCTTCACCTGGAAACCGAATGTCTAATCTTTTCTCAAAAGCATTTCAAGAACTGCGTGGACATTTAAATGATGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTCGAGAAAAACTCTCAAATGACATACCCTCACCACAGCTCAAAATTTCGACCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGCGTATGTTGCAGCTGCACTGTGCAGACAGAAGCTGCATGACGAAGTCCTAGAGAATTGGAAGTTGTCGATTCTTGATTCTACAATTAAACACGTTCTTATGTCATCACGTACCATAAAGAAGAATTTCCAGTCTCGTGGTCATGAGAAAAGGAAGTCATTTGGTGCAAATAAGGAACTTTTGAATGATGCTACTTCTGGACTGGGAAAAGGGAAGAAAGGCTCAAAAAGTTCTGGAGTTCCTCTGTTGGATGGAAAGCATACATATCAACGTAAGAAGCTTCCACGGAAAGAGTTTTGCTCCTCTCAGCCTGTTGTAGATGATAATTTAGGGCCAGGGAAGAAGCCTTTGGCTAACTTATGGAAACATGTTTCTGGAGATGTGAATGAGAGTGCAGAGGTTAAAATAACTGCTATTAAATGTGGAAAGACTAAGATGATTAAAGGGAAGGATACATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTCACCCAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTTACCCAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTATAGATAAAATGAAGTTTAATGAAAAGAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAGTAAATAGCTCTGATGTCACCATTCACAAGAAGACCACTGGTCATATATCTAGCGAGAAACTTAGTGTGACAAATAAAGTGTCAAAATCAAAAAGGAAGCATCAAACAGATGTTGTTACATCCTCACATCCTGCCAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAGAGCTACTGGCAAACAAGTAACTGAGGCACAGAAGAAATCTTCCGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGATGTGCTCGGACTTCTATTAATGGATGGGAATGGCATAAATGGTCACTAAGTGCTAGTCCTGCATGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTCACAAAACAAGTGCAGAAATTCTGAAAACACTTCATCCCAGGTGTCAAATGGTAAGGGTCTTTCTGCAAGAACCAATAGGGTGAAATTGCGTAACCTTCTTGCTGCCGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCGGAGGACTTTGTGATCGAATATATTGGAGAATTAATTCGTCCTCGGATATCTGATATACGTGAGCTTCAATATGAGAAGATGGGAATCGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAGAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAATTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCAGATCATTGAATTAA 3648 0.3956 MEMSYPSDVNRDVTMCSTSAVNISDSHQSFVQQPVFVSGWMYVNEHEQMCGPYIKEQLYEGLTSGFLPFELPVYPVINGTIMNPVPLDYFQQYPDHVSTGFAYMGMNFADTMMSTNGSSSSQDMTIYGQDRSCEPAALMAVNPNSKSVSQSNVNDCTKESDHLNLNSEAFRRIISCQMPGGECCWLYEDKKGTKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLSAAVNALKGDISGTICGSDSQSNGVGDVMNLNCEISEDISSQLHMGVMKAARRVVLDGIIGDIISEFVTKKKCKNQKLKSSDRTCTLDSKMMNNSTSIPPSEPAASHFLDDQACHEISRQSSMSVKAVGSIENFWWSYSVVRKALVDYCLQIMWNAVFFDTVKEYLFSWRKRKYWSQPKPPPTVNESKDYVEKIKSEALVLRPGSSICNVDADIQSGVMATERDCHPELFLSTNNFESRNITESQRVSCSYPNSKVLTCILERVENDLHFSAKVSLADYVRSVVEKEVNQVIPSLEIDKFSEVDDSNCRISEMLTSKTSVKEILNDKSVDPVKNRDSLWVSSPGNRMSNLFSKAFQELRGHLNDVVDEEEVGDMPPGFEKNSQMTYPHHSSKFRPSRIVECNPKITAYVAAALCRQKLHDEVLENWKLSILDSTIKHVLMSSRTIKKNFQSRGHEKRKSFGANKELLNDATSGLGKGKKGSKSSGVPLLDGKHTYQRKKLPRKEFCSSQPVVDDNLGPGKKPLANLWKHVSGDVNESAEVKITAIKCGKTKMIKGKDTSSKSRSSFNVDNSSPSDQLSLKNKTSQKVVKFAHTVQNGVMDIMKFNEKRPSASSKSRSSFNVDNSLPSDQLSLKNKTSQKVVKFAHTVQNGVIDKMKFNEKRLSTSTDNIVGMKVAKVNSSDVTIHKKTTGHISSEKLSVTNKVSKSKRKHQTDVVTSSHPAKVLKISNRGSSLRATGKQVTEAQKKSSVSKSLDLCPKSNGCARTSINGWEWHKWSLSASPACRARVRGRLPRSQNKCRNSENTSSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1373g00010 1215 ProSiteProfiles GYF domain profile. 182 238 IPR003169 GO:0005515
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 841 857 - -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 930 949 - -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 1021 1044 - -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 1024 1044 - -
Vivi1373g00010 1215 SUPERFAMILY GYF domain 178 229 IPR035445 -
Vivi1373g00010 1215 SMART set_7 1076 1199 IPR001214 GO:0005515
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 961 980 - -
Vivi1373g00010 1215 ProSiteProfiles SET domain profile. 1076 1193 IPR001214 GO:0005515
Vivi1373g00010 1215 SUPERFAMILY SET domain 1072 1211 IPR046341 -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 837 857 - -
Vivi1373g00010 1215 Pfam SET domain 1088 1192 IPR001214 GO:0005515
Vivi1373g00010 1215 ProSiteProfiles Post-SET domain profile. 1199 1215 IPR003616 -
Vivi1373g00010 1215 Gene3D - 175 250 IPR035445 -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 701 723 - -
Vivi1373g00010 1215 CDD SET_SETD1 1064 1211 IPR037841 GO:0042800|GO:0048188
Vivi1373g00010 1215 SMART PostSET_3 1199 1215 IPR003616 -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 789 811 - -
Vivi1373g00010 1215 Gene3D SET domain 907 1215 IPR046341 -
Vivi1373g00010 1215 MobiDBLite consensus disorder prediction 783 811 - -
Vivi1373g00010 1215 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 19 1215 IPR044570 GO:0042800|GO:0051568
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1373g00010 1067 1215 C2H2 Transcription Factor Family AT2G23740 36.257 7.72e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1373g00010 SET 8.5e-20 No_clan