Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1373g00008 ATGGAGATGAGCTACCCGTCAGATGTTAATCGAGATGTCACCATGTGTTCTACGAGCGCAGTTAATATTTCAGACTCACACCAGAGTTTTGTGCAACAGCCTGTTTTTGTGAGTGGATGGATGTATGTGAATGAACATGAACAAATGTGTGGTCCATATATTAAGGAGCAGTTATACGAGGGGCTAACTTCAGGTTTCTTGCCATTCGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAATGAACCCTGTACCATTGGATTATTTCCAACAGTATCCTGACCATGTTTCCACCGGGTTTGCATACATGGGTATGAATTTCGCAGACACAATGATGTCTACTAATGGCTCCTCTTCTTCTCAGGATATGACAATATACGGGCAAGATAGATCTTGTGAGCCTGCTGCTCTTATGGCTGTTAACCCAAATTCAAAGTCTGTTTCACAGTCAAATGTCAATGACTGCACTAAGGAATCAGATCACTTGAATTTGAATTCCGAGGCATTCAGGAGGATTATTTCTTGTCAGATGCCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAAAAAGGGTACGAAACATGGGCCACATTCCATTTCAGAATTGATTTCCTGGCATCACCATGGATATCTTGAAGATTCAACAGTGATCTCCCATTTTGACAATAAGTATGGAAACTTTGTGTTGTCGGCGGCTGTAAATGCATTGAAAGGAGATATATCTGGAACCATCTGTGGATCAGATTCCCAAAGCAACGGAGTAGGTGATGTGATGAACTTAAATTGTGAAATATCTGAAGACATTTCTTCACAATTGCACATGGGTGTAATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGGATTATTGGCGATATCATTTCAGAATTTGTTACTAAAAAGAAATGCAAAAACCAAAAGCTTAAGTCTTCTGATCGAACTTGCACGTTGGACAGTAAAATGATGAATAATAGTACTTCCATTCCTCCTAGTGAGCCTGCAGCTTCCCATTTTTTGGATGACCAGGCTTGCCATGAAATTTCCAGACAGTCTTCAATGAGTGTGAAGGCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATTCTGTTGTTCGTAAAGCACTTGTTGATTATTGCTTGCAAATCATGTGGAATGCAGTGTTTTTTGACACGGTAAAAGAGTACTTATTTTCCTGGAGGAAGAGGAAATATTGGTCTCAACCTAAGCCTCCACCAACTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGTTGATGCTGATATCCAGTCTGGCGTGATGGCGACAGAAAGAGATTGTCATCCTGAGTTGTTTTTATCTACTAATAACTTCGAAAGCCGAAACATAACCGAAAGTCAAAGAGTTTCATGCAGTTATCCTAATTCTAAAGTTTTGACATGTATTCTTGAACGTGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTTTAGCTGATTATGTTCGAAGTGTTGTTGAAAAGGAAGTAAACCAAGTAATTCCTTCCTTAGAAATAGATAAATTCAGCGAGTTGCAGGTTGATGATAGTAACTGCCGTATCTCAGAGATGCTTACCAGTAAAACATCTGTTAAAGAAATTCTAAATGACAAGTCTGTCGATCCTGTGAAAAATAGAGACTCACTTTGGGTGTCTTCACCTGGAAACCGAATGTCTAATCTTTTCTCAAAAGCATTTCAAGAACTGCGTGGACATTTAAATGATGTGGTTGACGAAGAGGAGGTTGGTGACATGCCACCTGGATTCGAGAAAAACTCTCAAATGACATACCCTCACCACAGCTCAAAATTTCGACCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGCGTATGTTGCAGCTGCACTGTGCAGACAGAAGCTGCATGACGAAGTCCTAGAGAATTGGAAGTTGTCGATTCTTGATTCTACAATTAAACACGTTCTTATGTCATCACGTACCATAAAGAAGAATTTCCAGTCTCGTGGTCATGAGAAAAGGAAGTCATTTGGTGCAAATAAGGAACTTTTGAATGATGCTACTTCTGGACTGGGAAAAGGGAAGAAAGGCTCAAAAAGTTCTGGAGTTCCTCTGTTGGATGGAAAGCATACATATCAACGTAAGAAGCTTCCACGGAAAGAGTTTTGCTCCTCTCAGCCTGTTGTAGATGATAATTTAGGGCCAGGGAAGAAGCCTTTGGCTAACTTATGGAAACATGTTTCTGGAGATGTGAATGAGAGTGCAGAGGTTAAAATAACTGCTATTAAATGTGGAAAGACTAAGATGATTAAAGGGAAGGATACATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTCACCCAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTCTTTCAATGTCGATAATAGCTTACCCAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGTAGTAAAGTTTGCGCATACAGTTCAAAATGGTGTTATAGATAAAATGAAGTTTAATGAAAAGAGGCTATCGACATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAGTAAATAGCTCTGATGTCACCATTCACAAGAAGACCACTGGTCATATATCTAGCGAGAAACTTAGTGTGACAAATAAAGTGTCAAAATCAAAAAGGAAGCATCAAACAGATGTTGTTACATCCTCACATCCTGCCAAGGTTTTGAAAATTTCAAATAGGGGGTCTAGTCTGAGAGCTACTGGCAAACAAGTAACTGAGGCACAGAAGAAATCTTCCGTATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGATGTGCTCGGACTTCTATTAATGGATGGGAATGGCATAAATGGTCACTAAGTGCTAGTCCTGCATGTAGAGCACGTGTCAGGGGTCGTCTTCCACGTTCACAAAACAAGTGCAGAAATTCTGAAAACACTTCATCCCAGGTGTCAAATGGTAAGGGTCTTTCTGCAAGAACCAATAGGGTGAAATTGCGTAACCTTCTTGCTGCCGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGACTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCGGAGGACTTTGTGATCGAATATATTGGAGAATTAATTCGTCCTCGGATATCTGATATACGTGAGCTTCAATATGAGAAGATGGGAATCGGAAGCAGTTACCTTTTCAGAATTGATGATGGTCATGTGGTTGATGCTACAAAGAGAGGCGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAATTTCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGCAGATCATTGAATTAA 3654 0.3957 MEMSYPSDVNRDVTMCSTSAVNISDSHQSFVQQPVFVSGWMYVNEHEQMCGPYIKEQLYEGLTSGFLPFELPVYPVINGTIMNPVPLDYFQQYPDHVSTGFAYMGMNFADTMMSTNGSSSSQDMTIYGQDRSCEPAALMAVNPNSKSVSQSNVNDCTKESDHLNLNSEAFRRIISCQMPGGECCWLYEDKKGTKHGPHSISELISWHHHGYLEDSTVISHFDNKYGNFVLSAAVNALKGDISGTICGSDSQSNGVGDVMNLNCEISEDISSQLHMGVMKAARRVVLDGIIGDIISEFVTKKKCKNQKLKSSDRTCTLDSKMMNNSTSIPPSEPAASHFLDDQACHEISRQSSMSVKAVGSIENFWWSYSVVRKALVDYCLQIMWNAVFFDTVKEYLFSWRKRKYWSQPKPPPTVNESKDYVEKIKSEALVLRPGSSICNVDADIQSGVMATERDCHPELFLSTNNFESRNITESQRVSCSYPNSKVLTCILERVENDLHFSAKVSLADYVRSVVEKEVNQVIPSLEIDKFSELQVDDSNCRISEMLTSKTSVKEILNDKSVDPVKNRDSLWVSSPGNRMSNLFSKAFQELRGHLNDVVDEEEVGDMPPGFEKNSQMTYPHHSSKFRPSRIVECNPKITAYVAAALCRQKLHDEVLENWKLSILDSTIKHVLMSSRTIKKNFQSRGHEKRKSFGANKELLNDATSGLGKGKKGSKSSGVPLLDGKHTYQRKKLPRKEFCSSQPVVDDNLGPGKKPLANLWKHVSGDVNESAEVKITAIKCGKTKMIKGKDTSSKSRSSFNVDNSSPSDQLSLKNKTSQKVVKFAHTVQNGVMDIMKFNEKRPSASSKSRSSFNVDNSLPSDQLSLKNKTSQKVVKFAHTVQNGVIDKMKFNEKRLSTSTDNIVGMKVAKVNSSDVTIHKKTTGHISSEKLSVTNKVSKSKRKHQTDVVTSSHPAKVLKISNRGSSLRATGKQVTEAQKKSSVSKSLDLCPKSNGCARTSINGWEWHKWSLSASPACRARVRGRLPRSQNKCRNSENTSSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1373g00008 1217 ProSiteProfiles GYF domain profile. 182 238 IPR003169 GO:0005515
Vivi1373g00008 1217 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 19 1217 IPR044570 GO:0042800|GO:0051568
Vivi1373g00008 1217 SMART set_7 1078 1201 IPR001214 GO:0005515
Vivi1373g00008 1217 Gene3D SET domain 909 1217 IPR046341 -
Vivi1373g00008 1217 ProSiteProfiles Post-SET domain profile. 1201 1217 IPR003616 -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 839 859 - -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 703 725 - -
Vivi1373g00008 1217 Gene3D - 175 250 IPR035445 -
Vivi1373g00008 1217 SUPERFAMILY GYF domain 178 229 IPR035445 -
Vivi1373g00008 1217 CDD SET_SETD1 1066 1213 IPR037841 GO:0042800|GO:0048188
Vivi1373g00008 1217 Pfam SET domain 1090 1194 IPR001214 GO:0005515
Vivi1373g00008 1217 ProSiteProfiles SET domain profile. 1078 1195 IPR001214 GO:0005515
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 791 813 - -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 785 813 - -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 843 859 - -
Vivi1373g00008 1217 SUPERFAMILY SET domain 1074 1213 IPR046341 -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 1023 1046 - -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 1026 1046 - -
Vivi1373g00008 1217 SMART PostSET_3 1201 1217 IPR003616 -
Vivi1373g00008 1217 MobiDBLite consensus disorder prediction 963 982 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1373g00008 1069 1217 C2H2 Transcription Factor Family AT2G23740 36.257 7.54e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1373g00008 SET 8.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1373g00008 - - psat:127137952 1552.34