Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1372g00004 ATGGGTGACTACTTTGCAAGGAGAATGGATTATGACATTGACCTCAACATTCCATTGGTTCCTGAGGATAGCACTCAAGACATGATGAACATAAGTAATGCAAACAATGAAGTCCATCCAGCTGCTGCTTCAGATGTTTCAAATTCTCGTACTTATCATGTTCAACCAATGATTTTTATTAATCCTGTCCTCGTCATTGTCAACCATGGAGTCCCACCAGACCCAAGACGTAGCCTTCATCGTCGTTGCAAAAAGCCTCGTTCACCTGATTCATCAAGATTCTGCACAAATCTTCAATGTATGGCAAGAAACACTCCTATGTGGCGCTCTGGACCTATTGGACGAAGGACTTTATGCAATGCTTGTGGAATTTACTACAAAAAACATGTGGTACGTGGAAATATTCCGGCAATCGTAATCCATGAAGATGGTTCTTCATCTGTTTTTGTTCCACCAACTCAATATGTGGCAGGAGGTTCTTCAACTGCCTAA 492 0.4167 MGDYFARRMDYDIDLNIPLVPEDSTQDMMNISNANNEVHPAAASDVSNSRTYHVQPMIFINPVLVIVNHGVPPDPRRSLHRRCKKPRSPDSSRFCTNLQCMARNTPMWRSGPIGRRTLCNACGIYYKKHVVRGNIPAIVIHEDGSSSVFVPPTQYVAGGSSTA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1372g00004 163 SMART GATA_3 89 145 IPR000679 GO:0006355|GO:0043565
Vivi1372g00004 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 134 - -
Vivi1372g00004 163 PANTHER OS01G0976800 PROTEIN 51 129 - -
Vivi1372g00004 163 CDD ZnF_GATA 94 129 IPR000679 GO:0006355|GO:0043565
Vivi1372g00004 163 ProSiteProfiles GATA-type zinc finger domain profile. 100 129 IPR000679 GO:0006355|GO:0043565
Vivi1372g00004 163 Gene3D - 84 139 IPR013088 GO:0006355|GO:0008270
Vivi1372g00004 163 Pfam GATA zinc finger 95 130 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1372g00004 75 140 C2C2-Gata Transcription Factor Family AT3G20750 40.909 1.74e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1372g00004 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1372g00004 - - vvo:131641476 217.624