Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1372g00003 ATGGGTGACTACTTTGAAAGGAGAATGGATTATGACATTGACCTAAACATTCCATTGGTTTCTCAAAATAGCACTCAAAACTTGATGAACATAAGAGCTGCATACAAAGAAGTCCATCAAACTACTGCTACTACAAATGTTTCAACTTTGGTCACAAAACAAGGCTCTATTGCTAGATCAGTTTCTCACAATATTCATGTTGAACCAATGTTTTTCATTGATTCTCTCCTTGTCATTGCCAACCACGGAGTCCCGAGAGACCCTGGACGTCGCCGCTACCGCCGTCATGGACAACCTCGTAAAGCTTGTCCAACTGATCCATTAAGATTTTGCACAAATCTTCATTGTATGACAAGAAAAACTCCCATGTGGCGCTCTGGACCTATTGGACCAAGGACTTTGTGCAATGCTTGTGGAATTTACTATAACAAACATATGATACATGGAAATATTCCTGCAATTATAATCCATGAAGATGGTTCTTCATCTGTTTTTGTTCCACCAACAAAATATTTGAAAAGATATTCTTCAACTTCTTAA 540 0.3833 MGDYFERRMDYDIDLNIPLVSQNSTQNLMNIRAAYKEVHQTTATTNVSTLVTKQGSIARSVSHNIHVEPMFFIDSLLVIANHGVPRDPGRRRYRRHGQPRKACPTDPLRFCTNLHCMTRKTPMWRSGPIGPRTLCNACGIYYNKHMIHGNIPAIIIHEDGSSSVFVPPTKYLKRYSSTS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1372g00003 179 SMART GATA_3 105 161 IPR000679 GO:0006355|GO:0043565
Vivi1372g00003 179 Gene3D - 108 162 IPR013088 GO:0006355|GO:0008270
Vivi1372g00003 179 Pfam GATA zinc finger 111 145 IPR000679 GO:0006355|GO:0043565
Vivi1372g00003 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 150 - -
Vivi1372g00003 179 CDD ZnF_GATA 110 145 IPR000679 GO:0006355|GO:0043565
Vivi1372g00003 179 PANTHER OS01G0976800 PROTEIN 39 145 - -
Vivi1372g00003 179 ProSiteProfiles GATA-type zinc finger domain profile. 115 148 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1372g00003 87 142 C2C2-Gata Transcription Factor Family AT5G25830 50.000 4.98e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1372g00003 GATA 6.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1372g00003 - - vvo:131641476 330.872