Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi136g00064 ATGACCTGTTTCCCTTTCTCATTCAAGAAGACATCACCGATTTCGAAACATAATCTCGACAACGACGAAGATATTTCAGGTATTCATAATGTTAAGATTTATACCTATAAAGAACTAAGCAAGGCCACAAATGATTTTAGTCAGGCCAATAAAATCGGAGAGGGTGGTTTCGGTTCAGTCTACATGGGACGTCTTAAAGGTGGAAAACTTGCTGCTATAAAAGTTCTTTCGGCCGAATCAAAACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCTGAAATCGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGTGTGGAAAGAAACAGCAGGATATTAGTCTACAATTACCTCGAAAATAACAGTCTTTCGCGAACTCTTCTAGGTGGAAGTCACAATAGTATCTACTTTGATTGGCGAACACGGTGTAGAATATGCGTTGGCGTTGCAAGCGGGCTTGCCTTTCTACACGAAGAAGTTAGGCCTCCTATCATTCATAGGGATATAAAAGCAAGCAATATTCTTCTCGATAAAGATCTTACGCCCAAGATTTCGGATTTCGGTCTTGCAAAGCTTATGCCTGCAAACGCGACTCATGTCAGCACACGCGTAGCAGGAACATTAGGCTATTTGGCACCAGAGTATGCAATCGGAGGGAGACTTACACGAAAAGCAGACATTTACAGTTTCGGTGTCCTCCTTGTGGAGATTGTTAGTGGAAGATGTAACACGAATTCGCGACTTCCAATAGACGAACAATTCATTCTAGAAAGGACATGGGAACTTTACGAGCGAAAGGAACTAGTTGCGCTTGTAGATACATCACTAAACGGAGACTTTGACGCCGAGCAGGCGTGTAAATTTCTGAAGATTGGCCTTCTTTGCACACAAGAATCTCCAAAGTGTCGTCCGACCATGTCTACCGTGGTCAAGATGCTTACCGGAGAAATGAAAGTTGATGACAGTACGATGACAAAACCGGCTTTAATTTCCGATTTTATGGACCTCAAAGTTAGAAAGAATCAAGAAAGTACTACAATTGATTTGAAGACTACATCTTCATACAATACATCGTCTACCTCAGAGCAACAGAACTCTACCATTACATCAGTTGCAACTACACAGTATGATCACAACAGCATGTAA 1158 0.4111 MTCFPFSFKKTSPISKHNLDNDEDISGIHNVKIYTYKELSKATNDFSQANKIGEGGFGSVYMGRLKGGKLAAIKVLSAESKQGVKEFLTEINVISEIEHENLVKLYGCCVERNSRILVYNYLENNSLSRTLLGGSHNSIYFDWRTRCRICVGVASGLAFLHEEVRPPIIHRDIKASNILLDKDLTPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIDEQFILERTWELYERKELVALVDTSLNGDFDAEQACKFLKIGLLCTQESPKCRPTMSTVVKMLTGEMKVDDSTMTKPALISDFMDLKVRKNQESTTIDLKTTSSYNTSSTSEQQNSTITSVATTQYDHNSM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi136g00064 385 CDD STKc_IRAK 52 319 - -
Vivi136g00064 385 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Vivi136g00064 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 363 - -
Vivi136g00064 385 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Vivi136g00064 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vivi136g00064 385 ProSiteProfiles Protein kinase domain profile. 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi136g00064 385 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi136g00064 385 FunFam cold-responsive protein kinase 1 122 333 - -
Vivi136g00064 385 FunFam cold-responsive protein kinase 1 16 121 - -
Vivi136g00064 385 MobiDBLite consensus disorder prediction 356 385 - -
Vivi136g00064 385 Gene3D Transferase(Phosphotransferase) domain 1 122 335 - -
Vivi136g00064 385 Pfam Protein kinase domain 47 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi136g00064 385 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi136g00064 20 346 Receptor kinase-like Gene Family AT1G07650 51.976 1.78e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi136g00064 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi136g00064 - - gmx:100782320 589.726