Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi136g00040 ATGATTCATTCAACTACGAAATCATCAAAAGAGAAAGAAAACGATCGCGGCATCAGTTCGCACGTCCTCACCCTCCATCGCCGTCTTCTCCACGCCTTAAACCTGGGAACCAGATACTTTGATGACAAGACAAATAGATGGAAGTGGCAGTGTGTTAACATTGAAGTGCAGAAAAATGTACTCCGGTCAATTTCTGCGTTTCTTGATTCTATTGCAGGTGATGCACGTGTCATACGGCATTCCATCGTTAAGGAATCTGCTGCTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAGTGAGCCCTTGTTAAGCATGGCATCAAATGTGGCTGTGAAGTTAGTTAGTGTTTTACCGAGCCAACAGTTGCAATTGCGATTGTTGGATCTTGTCTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCAATACCTTCTGCTACTGCTTTGAATTTGGTAATCTCAAATCTGAGTGCTACGAGTGAGAAGGCTGTTATTGAAGCACTGAAAGAAACAGAGGTTTCCGTTTGTATTGTTCAAAATATTAAAGACTGTGATGGGAAGAAAGTTGAATATTTTCTGGAGATGGCTTCACTTTTGAGTACAGTACTGTTGAGGTGGTCTTCATCTAGGTTCCCTGTTTGTAATGATGTTGAACTTATGAAAGTTTTAGCAAACATGCATATAAAGACAGATAGTTCCATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGCTTTATGTGATTCTGTAGTGCAAAAACTCATCGAGGGTGGAAAAGTATTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCCCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCCCTTGTTGATGCCATAATTTGTGGGATGAGAGAGACAGGTCCGTCTTCCAAAAAAATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGCTGGCTCTAATTACTCGTTGGGCTGGCGATCATCATATCAGGTTTTGGAAACAAGGAATTGATAAAGTCCTCCTTAGTCTTCTGATTGAAAATATTCACGATCAATCAACTGAACTTGTGTTGTCATTGGAAAAACAAATATCCATGGTGAAAGAGGGACTGAAAGTCAATTATCACGTTGCTGTGAGGAGTTACGTGTGGAACATTCTTGGGTGGCTTGTAATTCATTGTTCAGAAAATTCAAACCCTTACAGTTATACCCATGAGAGTGAACTCCACATCAACTTACTTATTATGTGTGCATGCTTCACTTTTGTGGATGCAATTCAAAAATGGTGCCGGATATGTCAAAATGACGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTTATTCTCCATGTAATTATATTTCTTCACATGCTAGATTTGTATTATCTGATATACTAAAGGTCAAAGGCGATCCATGCTTGAAAAATTCACTACATACCATAGATTATTTATCATCTTTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTATTATTAACTTAATTGGGTTAACTTGTCTTACAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGGATAAAGGCTGTTGTTCTTCTTGTCCAACGATGCTTAAGTAATGATGTTCATATGGAAAGGTCTGAAGTTGCTCCTCATTTGCATACTGTATTCCATAAAAGGTCTTGTTGCTGGACTGGTAAAGGAGGCTGGGAAGGTTCCAATATCCTTTTATTTTATGGTCTGTGGGGCATAGCTGAATTTCTTCATCAGTGTTGCCTTTTACCAGACAATCCTCAGCAATTTACTAGAGAGGTGACAAACATTAACACTGAATTAGTTAACAAACTTCATGATATCTGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATCGGGAAATCTCTTAATAAGGAAGAATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCACTTCTACCTTCTCAAGTGTTATCTAGTAGTAAGAGTTCTAAAGAAATAACAGATTGTTTTGTTAGAGAGACCGTGAGAGAAGTTCGCTATTCTTCTCATGTTGATTATGAAGCGTTGTTGTTATTGTTGGAATATGTGTATTTGGGACACTTGCATGCAGCAGAAGAAGAAACTGTAAAGAAGCTCAAAGTTCTTGCTAAGCGTTGCAATCTACAACCTCTCTTGCAACTGCTTTGTAGACAATCTCCAAAGTGGGACGCACCTTTCCCCATCTTTAATCTTACTTCATCTCCTGATTCAGCTGGAAGTTATTTTTTGTATGGTTTGCTTCTTGACCAGATTCTTCTAGATATGTAG 2514 0.3791 MIHSTTKSSKEKENDRGISSHVLTLHRRLLHALNLGTRYFDDKTNRWKWQCVNIEVQKNVLRSISAFLDSIAGDARVIRHSIVKESAADILGALLWILQCKSEPLLSMASNVAVKLVSVLPSQQLQLRLLDLVYCLSSLLSSHQVEVAIPSATALNLVISNLSATSEKAVIEALKETEVSVCIVQNIKDCDGKKVEYFLEMASLLSTVLLRWSSSRFPVCNDVELMKVLANMHIKTDSSIKLVLLKLYTSLALCDSVVQKLIEGGKVFLQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPSSKKIENNYGSVLVEACKLALITRWAGDHHIRFWKQGIDKVLLSLLIENIHDQSTELVLSLEKQISMVKEGLKVNYHVAVRSYVWNILGWLVIHCSENSNPYSYTHESELHINLLIMCACFTFVDAIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGDPCLKNSLHTIDYLSSLKSYSSFDKLQLIINLIGLTCLTSLPQYQRCIIESRGIKAVVLLVQRCLSNDVHMERSEVAPHLHTVFHKRSCCWTGKGGWEGSNILLFYGLWGIAEFLHQCCLLPDNPQQFTREVTNINTELVNKLHDICSSTSFSPGVKWYVSYILSYFGFYGFPNEFSKRIGKSLNKEEYADLRLIVANGDSVSVHGVILAVRCPSLLPSQVLSSSKSSKEITDCFVRETVREVRYSSHVDYEALLLLLEYVYLGHLHAAEEETVKKLKVLAKRCNLQPLLQLLCRQSPKWDAPFPIFNLTSSPDSAGSYFLYGLLLDQILLDM 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi136g00040 837 Pfam BTB/POZ domain 686 796 IPR000210 GO:0005515
Vivi136g00040 837 ProSiteProfiles BTB domain profile. 694 774 IPR000210 GO:0005515
Vivi136g00040 837 Gene3D Potassium Channel Kv1.1; Chain A 676 801 IPR011333 -
Vivi136g00040 837 SMART BTB_4 694 805 IPR000210 GO:0005515
Vivi136g00040 837 SUPERFAMILY POZ domain 673 798 IPR011333 -
Vivi136g00040 837 PANTHER OS06G0674800 PROTEIN 4 824 IPR044953 -
Vivi136g00040 837 SUPERFAMILY ARM repeat 54 680 IPR016024 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi136g00040 BTB 2.6e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi136g00040 - - mtr:25487018 1431