Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi136g00030 ATGGCGAAACCTGGCAGAGCTCGCCGCTCACCACCGTCGGGTTCCGTCTCCGGATCTTCCTCTCTCTCCTCTTCCTCTCGCTCCTCTTCTCGCTCCCGTTCTCGCTCCAGATCCTTCTCTTCCTCCTCCTCCCGCAGTTCCAAGAGCCGCAGCCGGAGTCCTCCTCCTCAGAGACGGAAAAGTTCCACTGAACCAGCTAGGCGAGGTCGATCTCCTGCTCTTCCTCCCCCTCCCCTGTCTAAGAGAACTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGCGAGTCTCTTGTTCTGCACGTTGAAAAACTCAGCAGGAACGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAATTTTGGTGAGGTTGTAAGTGTGGAGTTGGTGATGGATAGAGCTGTTAATCTTCCAAAAGGATATGGGTATGTGCATTTCAAGACAAGAGGGGAAGCCGAAAAAGCATTAAATTTCATGGATGGTGCCCAAATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAAGCTTCTGCTGTTGCTCCAAAGAGAGATGCACCTAGGACTGACAACGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCCAAGAGAATCTCCTCCTAGGAGAAAACTTCCTCCCTCACCACGAAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGAATTGAATCTCCTCGACGCCGTGCAGATTCTCCTGTCCGTCGTCGATTAGATTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCTGTGTCTCCTGGAAGAGGCCGTTCTCCATCTCCCCCACCTAGGCGTCTGAGATCCCCTGCAAGAGTTTCACCTCGAAGAATGCGTGGAAGCCCGGGCCCAGGCCGGAGACGTACGCCTCCTCCGCCTCCAAGACGCCGTTCACCTCCCAGACGAGCCCGTAGTCCTCCTAGAAGATCTCCTGTTGGCCGTAGGCGTAGTCGCTCTCCAATACGTAGATCTGCACGCTCTCGCTCAAGATCGTTCTCACCTCGCAGAGGTCGGCCACCTGTGAGACGGGGAAGGTCATCATCTTACTCTGATTCACCAAGTCCTCGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGCTAGTAGCAACAGTAGCAGCAGCAGTTCACCACCCCCAGCCCGCAAACCATAG 1245 0.5341 MAKPGRARRSPPSGSVSGSSSLSSSSRSSSRSRSRSRSFSSSSSRSSKSRSRSPPPQRRKSSTEPARRGRSPALPPPPLSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALNFMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDAPRTDNAGADVEKDGPKRPRESPPRRKLPPSPRRRSPVPRRAGSPRRIESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPRRMRGSPGPGRRRTPPPPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSSSPPPARKP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi136g00030 414 FunFam Serine/arginine-rich splicing factor SR45 3 182 - -
Vivi136g00030 414 SMART rrm1_1 98 171 IPR000504 GO:0003723
Vivi136g00030 414 MobiDBLite consensus disorder prediction 313 365 - -
Vivi136g00030 414 Gene3D - 16 181 IPR012677 -
Vivi136g00030 414 MobiDBLite consensus disorder prediction 70 92 - -
Vivi136g00030 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Vivi136g00030 414 MobiDBLite consensus disorder prediction 239 269 - -
Vivi136g00030 414 MobiDBLite consensus disorder prediction 394 414 - -
Vivi136g00030 414 MobiDBLite consensus disorder prediction 173 414 - -
Vivi136g00030 414 MobiDBLite consensus disorder prediction 1 95 - -
Vivi136g00030 414 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 11 264 - -
Vivi136g00030 414 MobiDBLite consensus disorder prediction 197 222 - -
Vivi136g00030 414 SUPERFAMILY RNA-binding domain, RBD 84 183 IPR035979 GO:0003676
Vivi136g00030 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Vivi136g00030 414 MobiDBLite consensus disorder prediction 12 60 - -
Vivi136g00030 414 CDD RRM_RNPS1 99 171 IPR034201 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi136g00030 99 172 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.06e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi136g00030 K14325 - gmx:100804778 301.212