Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi136g00002 ATGAATATTCAACATTTACAAGATGATGATGATGATGATGTTCCACTTCCTGGATTCAGATTCCATCCTACTGATCAAGAACTTGTCACCTTTTATCTTCGACGAAAACTCGACAACAAACCTATTTCTATTGACCTCATCAAACAAGTTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCTAGTGTACATGGAGCAGAAAAAGAGGGTTATTTTTTTTGCAAAAGAGGGAGAAAATATAAGAACAGTATTAGGCCAAATAGAGTAACTGGATCTGGATTCTGGAAAGCAACAGGAATAGACAAAGCAATATACTCAAATGGAGGAGAAGGAAATGATTGCGTTGGACTCAAGAAAACACTTGTTTACTACCGCGGTAGCGCTGGTAAGGGCGCCAAAACCGATTGGATGATGCACGAGTTTCGTCTTCCGTCTGATATTGCTACCAGCGCAGATCGTGACCGCGATAAGAAGGATAATGATTTTTCTCATGAAGAAATTTGGACATTATGTAGGATTTTCAAAAGAAATATACCGCCGAAGAAGCAACAAATACCTGAGGTGAAGCCATTGGCGAACAAGCGTCAGAGTCAGATCATTCATGAAAAGAGTAGTAGATTAAACAATATGGAGTTCGGCGCAAATCAACAAACATATATCAATTTTGGTGCAAGCCACGAGCATCGGCCTATTAATGAACACAGTTCGATCAACAACTATACGAGCATTGATCGAATGAATCAGTTTCATGTAGATCAGTTGAGCTCTTCTTCCGTGGCGCATCAACCTCAACAAAATAGTGTAACGCAATCTTCGAATTATTGGGTTAATGAGGCTGCTAATGAGTTATTATCCTTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTTCTGTTGATTCACCTAGTTTGTAA 924 0.3885 MNIQHLQDDDDDDVPLPGFRFHPTDQELVTFYLRRKLDNKPISIDLIKQVDIYKYDPWDLPKSSVHGAEKEGYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKAIYSNGGEGNDCVGLKKTLVYYRGSAGKGAKTDWMMHEFRLPSDIATSADRDRDKKDNDFSHEEIWTLCRIFKRNIPPKKQQIPEVKPLANKRQSQIIHEKSSRLNNMEFGANQQTYINFGASHEHRPINEHSSINNYTSIDRMNQFHVDQLSSSSVAHQPQQNSVTQSSNYWVNEAANELLSFDNWDELGSVVKFSVDSPSL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi136g00002 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 263 - -
Vivi136g00002 307 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Vivi136g00002 307 FunFam NAC domain-containing protein 35 24 181 - -
Vivi136g00002 307 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Vivi136g00002 307 Pfam No apical meristem (NAM) protein 17 145 IPR003441 GO:0003677|GO:0006355
Vivi136g00002 307 SUPERFAMILY NAC domain 16 178 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi136g00002 8 209 NAC Transcription Factor Family AT1G26870 52.995 1.09e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi136g00002 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi136g00002 - - gmx:100790471 399.053