Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1367g00001 ATGTCTCGCCCAATTGAGCCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGTTGTTAGGTGCAAACATCTGTGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCTAAGCGTGATATGATTCAGGTTGTTGTCCCTGTTTATTTGCTTTCGAAATTCAAATCTGAAATTGAAACAGGAAACTCTTATATCATGCAAAATTTTAAAGTTGGGAAGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGGTTTTTTGTGGGTCAACTTCTGTTAAGAAAGCAGAATTTCCTGATATCCCTCATAACTACCTTAACATTATTGGTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATTTGTTGGTTGATTTGATTGGAGGAATCACTGATATCACTCAAACCCAAGTTAACGGTGACAACAGCAAGAACAGAATAGTTTTTTCTATTGTAGATGCCAGCAAAACAGTTGTACAATGTACTCTTTGGGGGCAACTTGCAGTTCAGCTATATGAGTATTATAAGAATACTAAGCAAGCCTCTGATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCAATTAGTGTTTCCAACACATGGAATGGAACGAAACTGTTGATTAATGACCCTGCTATTGAGGAAGTCAAGAATCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGGCAACGCAAAACTCATTTTATTCTGACTATGACAAGTTTGTTTGGAAGGCTGAAATAATGAGTCTCTCTGAAATAACAAATCTGCAACATGAAACAACCTGTGTTACCGTTGCTACCCTCGATAAGTTTGATGCTGGGCAGATTGGATGGTACTATGATGGATGTGTGGAATGCACAAGAAGTGTGACTGCCAATGATGGAAAGCTGAAGTATTTTAAAGAGCATATTAGCCCAGAGCTTGTGCCACGGTATAAGCTTGATATAATGGTTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACGGACTGCGTGAAGTTGATTGGGAAGTCTGCTCTTCAAATGAAGATGGATTTAACTCAGTCTGGTGATTACGATCCACTTGAATTCCCTTATGAACTTGACTCAATACTAAAAAATGAATTGGCAATTAGAGCTGTTTATCAGCCCAAAAATGGTCGACTTTCGGTGATTGGCTTCAAAACTGATGAAGATGTTCGTAATAAAATTAAGGACAGTTTAAAATTTGAAGAGACCTCAAAACTTCGAGCACTAGAACCTCTGTCCCAGGATGATATGAATAGCATTTCTGAACCTGTATCTGCATCTGCAGAAAATGACCTGACCATTGAAAATTCAGAGCTCACTCCATGTAAGAGACTTATAAATGATGCAATAGAGGATAATGATAGTGTTCAACAATCATCAACCAAGATGGCCAGAGATATTAAAAAGGAGAAATAG 1521 0.3748 MSRPIEPLKEINDSKDLWKIVVRCKHLWTVTSSSNKEHMEMVLVDSKRDMIQVVVPVYLLSKFKSEIETGNSYIMQNFKVGKNDFAFKSTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIGLNSIVEGRFQSNLLVDLIGGITDITQTQVNGDNSKNRIVFSIVDASKTVVQCTLWGQLAVQLYEYYKNTKQASDIVIVLINARVKEAQGGFPISVSNTWNGTKLLINDPAIEEVKNLKERLGVDLPLLSSSSVQVEATQNSFYSDYDKFVWKAEIMSLSEITNLQHETTCVTVATLDKFDAGQIGWYYDGCVECTRSVTANDGKLKYFKEHISPELVPRYKLDIMVVDGSSKAKFVFWDTDCVKLIGKSALQMKMDLTQSGDYDPLEFPYELDSILKNELAIRAVYQPKNGRLSVIGFKTDEDVRNKIKDSLKFEETSKLRALEPLSQDDMNSISEPVSASAENDLTIENSELTPCKRLINDAIEDNDSVQQSSTKMARDIKKEK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1367g00001 506 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Vivi1367g00001 506 SUPERFAMILY Nucleic acid-binding proteins 275 405 IPR012340 -
Vivi1367g00001 506 Gene3D - 2 107 IPR012340 -
Vivi1367g00001 506 Gene3D - 267 428 IPR012340 -
Vivi1367g00001 506 PANTHER OS03G0429900 PROTEIN 11 452 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1367g00001 506 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Vivi1367g00001 506 Gene3D - 110 244 IPR012340 -
Vivi1367g00001 506 CDD RPA1_DBD_B_like 137 242 - -
Vivi1367g00001 506 MobiDBLite consensus disorder prediction 485 506 - -
Vivi1367g00001 506 CDD RPA1_DBD_A_like 19 104 - -
Vivi1367g00001 506 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1367g00001 1 371 Core DNA Replication Machinery Family AT5G08020 21.795 3.97e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1367g00001 - - vvo:131614721 870.922