Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1366g00001 ATGACATCACGTTCGTCGCACGTCGGTGGAACCAGCAGCGGCGGCGGACGGCCAAGAGCGGGGAGGTATGAGCTAGGTAGGACGTTAGGAGAAGGTAATTTCGCGAAGGTGAAGTTTGCGAGGCACATTGAAACGGGAGAGCATGTAGCTATCAAAATTCTTGATAAGGAGAAAATTCTCAAGCATAAGATGATTCGTCAGATTAAACAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTTATTCGTATGCATGAGGTGATAGCTAACAAGTCAAAGATATTCATTGTAATGGAAATTGTGACTGGTGGAGAGCTGTTTGACAAAATTGCACGCAGTGGGAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGTCACAGAGACCTAAAGCCTGAGAATTTGTTGCTGGACGCTAATGGAACGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGACTACTTCATACGACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATCGACAACAAAGGGTATGATGGTGCAAAGGCAGATCTTTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAGACAATCTTATGGCTTTATATAAAAAGATTTTTAAGGCTGACTTCGCCTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAGAGAATCCTTGATCCCAATCCCCGCACCCGGATTACAATTGCCGAGGTGATTGAAAATGAGTGGTTCAAGAAGGGATATTCGCCTCCTGTGTTTGAACAGGCTAATGTTAGTCTTGATGATGTAAATTTTATTTTCAATGGTTCTATGGATTCGGATAATAGTGTTGTTGAAAGGCATGAAGAGGGGCCTGTTGCACCTGTGACCATGAATGCGTTTGAACTTATCTCTAAATCTCAGGGCCTCAACCTTAGTAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCGAATGAGATCATTTCAAAAATCGAGGCAGCTGCAGGACCTCTGGGTTTTGATGTCAAGAAGAACAACTGCAAGTTAAGGATTCACGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACAGAGATCTTGGAGGTGGCCCCTTCAATTTACATGGTTGAGATGCGAAAGTTTGAAGGAGATACTCTGGAATTTCACAAATTCTACAAAAATATATCTACCGGGCTGAAAGATATCGTTTGGAAAGCCGATCCTATTGCTGAAGAAATAGAGACTGGTGGCAGCAGTAAATCAAAATAA 1389 0.4197 MTSRSSHVGGTSSGGGRPRAGRYELGRTLGEGNFAKVKFARHIETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANKSKIFIVMEIVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGTLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIDNKGYDGAKADLWSCGVILFVLMAGYLPFEEDNLMALYKKIFKADFACPPWFSSSAKKLIKRILDPNPRTRITIAEVIENEWFKKGYSPPVFEQANVSLDDVNFIFNGSMDSDNSVVERHEEGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEAAAGPLGFDVKKNNCKLRIHGEKTGRKGHLSVATEILEVAPSIYMVEMRKFEGDTLEFHKFYKNISTGLKDIVWKADPIAEEIETGGSSKSK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1366g00001 462 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1366g00001 462 Gene3D Kinase associated domain 1, KA1 320 445 - -
Vivi1366g00001 462 CDD STKc_SnRK3 22 277 - -
Vivi1366g00001 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vivi1366g00001 462 CDD CIPK_C 326 441 - -
Vivi1366g00001 462 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1366g00001 462 FunFam Non-specific serine/threonine protein kinase 17 318 - -
Vivi1366g00001 462 FunFam Non-specific serine/threonine protein kinase 15 102 - -
Vivi1366g00001 462 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vivi1366g00001 462 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1366g00001 462 FunFam Non-specific serine/threonine protein kinase 319 445 - -
Vivi1366g00001 462 SUPERFAMILY Protein kinase-like (PK-like) 20 294 IPR011009 -
Vivi1366g00001 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 434 - -
Vivi1366g00001 462 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1366g00001 462 Gene3D Transferase(Phosphotransferase) domain 1 103 284 - -
Vivi1366g00001 462 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165
Vivi1366g00001 462 Pfam NAF domain 322 382 IPR004041 GO:0007165
Vivi1366g00001 462 Gene3D Phosphorylase Kinase; domain 1 14 102 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1366g00001 12 452 CBL-interacting serine-threonine protein kinases AT1G01140 66.667 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi1366g00001 Pkinase 3.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1366g00001 - - gmx:100788746 785.408