Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1359g00011 ATGGCAGAAGCGGCTACTTCTTCGATGAGAAAGGCCAAAAGAAAAAACAGAAGCCTAAAAACTCAGGACCCTGAGCTCGACCGTCTCGAATCACTTCCATGGAACTCTTCTATTCCTCAACAGGATGAACAAGATGATAACGCTTTTTCGCTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCGGATTATGGTATAAATATTCCCGATCCTGAAAATCATGACAGGAAACACAATTCTAATCAGAACAAGAAGTTGAATAAGCAGAAACAAGACATTACTTGTAGTGATGGAGAAACGGTGAATGATGAGAGCAAAAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAAGGATGCAAAGGAAAACCAGAAAGTTCAGCATTCAAATTCAAATACTGCCGTAGATGCCGATGTGAAGGATGTTGTTGAGGAAGAGAGCATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTTTTAATGAAAGCAATACACAAGTTGGGATTCAAGGAACCAACACCAATACAAAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATCGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGTGAGAAGGCTGCAAATGTGGTCAGTGAAAAGGGTGAAGAAGCTGAAAAATACGCTTCCACGGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTCGGGTGACCCCTATAGTTGGAGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGTACTCCAGGGAGGTTATGGGAACTAATGTCATCTGGAGAAAAGCATCTGGTTGAGTTACATTCGCTGTCTTTTTTTGTTCTTGACGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCTAATGTCTCCAGTGAAGTTAATTCTCAAGATGCACAAAGTTGTGTTACAGTTTCTAGTGTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCTGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCGGTTCAATTCAGAAAAAGCAACTGTCGACTGATGGTTTGGATTCTATTGAAACTCTTTCTGAGCGAGCGGGAATGAGACCCAATGCAGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAGATTGAGGAGTCATTTATTGAATGCACAGAAGACGATAAAGATGCCCATTTGTATTATATTCTCACTGTCCATGGACAAGGACGCACTATAGTTTTCTGTACGTCAATTGCTGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCGTCAATGTCTGGACTCTTCATGCTCAAATGCAACAACGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAAGGAAAATGGCATACTTGTTGCAACAGATGTTGCTGCAAGAGGTCTTGATATACCCGGTATTAAAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCGAAGGATACCTTTCAACGGTTTCCTTTGGAGAACTCATACATGCCAGAGATTCTAAAACGATTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCTCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACCGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACATAGACAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCAAACGGAACTCAGTACGCTGATTTCACGTCCTCTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCCGGTGTAACGCCCCTCCTGCAGGAACAATTGCAACAATTAGCAAGGCAAAAATTAAGTGAGCGCCAGGGTACAGGATTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGACGCACTTCATGCACTTCGGAGTGCTGGTGAAGAGGTACGCATGGATATCAAGGATTCAACGGGAAGACAAAGAAATGCAGTGAGTTCTAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGCGATCAACGTAAAAAGAAGAAGAGAGATCTAAACCAGGACGATGAATAG 2400 0.4129 MAEAATSSMRKAKRKNRSLKTQDPELDRLESLPWNSSIPQQDEQDDNAFSLFTGSNELEGGFLSLEEIDEADYGINIPDPENHDRKHNSNQNKKLNKQKQDITCSDGETVNDESKKSKVKKKKKKKSKDAKENQKVQHSNSNTAVDADVKDVVEEESIDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKAANVVSEKGEEAEKYASTGLLRSLIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNVSSEVNSQDAQSCVTVSSVQRKKRQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGIKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLQTELSTLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKLSERQGTGFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNAVSSKRKRKEEKTRLRDQRKKKKRDLNQDDE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1359g00011 799 CDD SF2_C_DEAD 451 580 - -
Vivi1359g00011 799 MobiDBLite consensus disorder prediction 33 54 - -
Vivi1359g00011 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 450 611 IPR001650 -
Vivi1359g00011 799 MobiDBLite consensus disorder prediction 1 54 - -
Vivi1359g00011 799 Coils Coil 773 793 - -
Vivi1359g00011 799 MobiDBLite consensus disorder prediction 76 91 - -
Vivi1359g00011 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 587 IPR027417 -
Vivi1359g00011 799 MobiDBLite consensus disorder prediction 73 148 - -
Vivi1359g00011 799 MobiDBLite consensus disorder prediction 758 799 - -
Vivi1359g00011 799 PANTHER RNA HELICASE 121 709 - -
Vivi1359g00011 799 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 335 343 IPR000629 -
Vivi1359g00011 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 359 IPR027417 -
Vivi1359g00011 799 Pfam Helicase conserved C-terminal domain 462 570 IPR001650 -
Vivi1359g00011 799 SMART helicmild6 490 571 IPR001650 -
Vivi1359g00011 799 Coils Coil 224 244 - -
Vivi1359g00011 799 Gene3D - 111 411 IPR027417 -
Vivi1359g00011 799 Gene3D - 448 690 IPR027417 -
Vivi1359g00011 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 413 IPR014001 -
Vivi1359g00011 799 Pfam DEAD/DEAH box helicase 188 396 IPR011545 GO:0003676|GO:0005524
Vivi1359g00011 799 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Vivi1359g00011 799 SMART ultradead3 183 423 IPR014001 -
Vivi1359g00011 799 Coils Coil 647 687 - -
Vivi1359g00011 799 Coils Coil 2 22 - -
Vivi1359g00011 799 CDD DEADc_DDX24 175 440 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1359g00011 146 596 Eukaryotic Initiation Factors Gene Family AT1G72730 25.647 3.61e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1359g00011 K14805 - gmx:100806018 1226.08