Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1359g00010 ATGGCAGAAGCGGCTACTTCTTCGATGAGAAAGGCCAAAAGAAAAAACAGAAGCCTAAAAACTCAGGACCCTGAGCTCGACCGTCTCGAATCACTTCCATGGAACTCTTCTATTCCTCAACAGGATGAACAAGATGATAACGCTTTTTCGCTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCGGATTATGGTATAAATATTCCCGATCCTGAAAATCATGACAGGAAACACAATTCTAATCAGAACAAGAAGTTGAATAAGCAGAAACAAGACATTACTTGTAGTGATGGAGAAACGGTGAATGATGAGAGCAAAAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAAGGATGCAAAGGAAAACCAGAAAGTTCAGCATTCAAATTCAAATACTGATGCCGATGTGAAGGATGTTGTTGAGGAAGAGAGCATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTTTTAATGAAAGCAATACACAAGTTGGGATTCAAGGAACCAACACCAATACAAAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATCGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGTGAGAAGGCTGCAAATGTGGTCAGTGAAAAGGGTGAAGAAGCTGAAAAATACGCTTCCACGGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTCGGGTGACCCCTATAGTTGGAGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGTACTCCAGGGAGGTTATGGGAACTAATGTCATCTGGAGAAAAGCATCTGGTTGAGTTACATTCGCTGTCTTTTTTTGTTCTTGACGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCTAATGTCTCCAGTGAAGTTAATTCTCAAGATGCACAAAGTTGTGTTACAGTTTCTAGTGTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCTGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCGGTTCAATTCAGAAAAAGCAACTGTCGACTGATGGTTTGGATTCTATTGAAACTCTTTCTGAGCGAGCGGGAATGAGACCCAATGCAGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAGATTGAGGAGTCATTTATTGAATGCACAGAAGACGATAAAGATGCCCATTTGTATTATATTCTCACTGTCCATGGACAAGGACGCACTATAGTTTTCTGTACGTCAATTGCTGCTTTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCGTCAATGTCTGGACTCTTCATGCTCAAATGCAACAACGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAAGGAAAATGGCATACTTGTTGCAACAGATGTTGCTGCAAGAGGTCTTGATATACCCGGTATTAAAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCGAAGGATACCTTTCAACGGTTTCCTTTGGAGAACTCATACATGCCAGAGATTCTAAAACGATTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCTCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACCGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACATAGACAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCAAACGGAACTCAGTACGCTGATTTCACGTCCTCTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCCGGTGTAACGCCCCTCCTGCAGGAACAATTGCAACAATTAGCAAGGCAAAAATTAAGTGAGCGCCAGGGTACAGGATTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGACGCACTTCATGCACTTCGGAGTGCTGGTGAAGAGGTACGCATGGATATCAAGGATTCAACGGGAAGACAAAGAAATGCAGTGAGTTCTAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGCGATCAACGTAAAAAGAAGAAGAGAGATCTAAACCAGGACGATGAATAG 2394 0.4123 MAEAATSSMRKAKRKNRSLKTQDPELDRLESLPWNSSIPQQDEQDDNAFSLFTGSNELEGGFLSLEEIDEADYGINIPDPENHDRKHNSNQNKKLNKQKQDITCSDGETVNDESKKSKVKKKKKKKSKDAKENQKVQHSNSNTDADVKDVVEEESIDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKAANVVSEKGEEAEKYASTGLLRSLIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNVSSEVNSQDAQSCVTVSSVQRKKRQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGIKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLQTELSTLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKLSERQGTGFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNAVSSKRKRKEEKTRLRDQRKKKKRDLNQDDE 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1359g00010 797 MobiDBLite consensus disorder prediction 755 797 - -
Vivi1359g00010 797 MobiDBLite consensus disorder prediction 33 54 - -
Vivi1359g00010 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 411 IPR014001 -
Vivi1359g00010 797 MobiDBLite consensus disorder prediction 1 54 - -
Vivi1359g00010 797 Coils Coil 222 242 - -
Vivi1359g00010 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Vivi1359g00010 797 Gene3D - 446 688 IPR027417 -
Vivi1359g00010 797 MobiDBLite consensus disorder prediction 76 91 - -
Vivi1359g00010 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 585 IPR027417 -
Vivi1359g00010 797 Coils Coil 645 685 - -
Vivi1359g00010 797 Gene3D - 111 409 IPR027417 -
Vivi1359g00010 797 SMART helicmild6 488 569 IPR001650 -
Vivi1359g00010 797 MobiDBLite consensus disorder prediction 73 148 - -
Vivi1359g00010 797 CDD DEADc_DDX24 173 438 - -
Vivi1359g00010 797 CDD SF2_C_DEAD 449 578 - -
Vivi1359g00010 797 Pfam Helicase conserved C-terminal domain 460 568 IPR001650 -
Vivi1359g00010 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 357 IPR027417 -
Vivi1359g00010 797 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 333 341 IPR000629 -
Vivi1359g00010 797 PANTHER RNA HELICASE 121 707 - -
Vivi1359g00010 797 Coils Coil 771 791 - -
Vivi1359g00010 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 609 IPR001650 -
Vivi1359g00010 797 Pfam DEAD/DEAH box helicase 186 394 IPR011545 GO:0003676|GO:0005524
Vivi1359g00010 797 Coils Coil 2 22 - -
Vivi1359g00010 797 SMART ultradead3 181 421 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1359g00010 137 594 Eukaryotic Initiation Factors Gene Family AT1G72730 25.478 1.12e-39 150