Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1358g00003 ATGGAATGGTCTTTCACTCCATTCCAGAAGCTTAACTTCAACATCAACAACGTGGTTTCAAAGTTGTCGGATTCAAATATCGTCGGAAAGGGTTGCTCAAGCGTTATTTACTGCGTAGAGACTCCGACAAAACAGATGAGGCATAAAAATATAGTAAGACTTTTAGGATGCTGCAACAATGGAGGAACTAGATTGTTGTTGTTTGATTACATATGTAATGGAAGTTTGTTTGGATTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAAAAGCTCATGGTTTGGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCATCGCAACATTAAGGCTAACAACATCTTGGACGGTCCACAGTTCGAAGCTTTTCTTGCAGATTTCGGCCTTGCAAAATTGGTCACTTCCTCGGACTGCTCAAGATCCTCGCATGTAGTTGCAGGTTCTTACGGATACATAACTCCAAGTTTGGTGAAACTATAA 510 0.402 MEWSFTPFQKLNFNINNVVSKLSDSNIVGKGCSSVIYCVETPTKQMRHKNIVRLLGCCNNGGTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGKAHGLEYLHHDCIPPIVHRNIKANNILDGPQFEAFLADFGLAKLVTSSDCSRSSHVVAGSYGYITPSLVKL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1358g00003 169 ProSiteProfiles Protein kinase domain profile. 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1358g00003 169 SMART tyrkin_6 22 169 IPR020635 GO:0004713|GO:0006468
Vivi1358g00003 169 Pfam Protein kinase domain 44 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1358g00003 169 SUPERFAMILY Protein kinase-like (PK-like) 12 165 IPR011009 -
Vivi1358g00003 169 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 43 164 - -
Vivi1358g00003 169 Gene3D Transferase(Phosphotransferase) domain 1 12 169 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1358g00003 3 164 Receptor kinase-like Gene Family AT5G56040 43.147 4.69e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1358g00003 Pkinase 3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1358g00003 - - vvo:131595665 348.977