Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1353g00001 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATTGATAATTCGACGAGTCGACAAGTGACGTTTTCGAAGCGAAGAAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGGAATTTTGTGTGATGCTGAAGTTGGAGTTATAATCTTCTCCAGCACTGCGAAACTCTATGAGTTTGCGAGTTCCAGCATGAAATCAGTAATTGATCGATACAACAAATCAAAAGAAGAACATAATCAACTTGGGAGTCCAGCCTCTGAAATTAAGTTCTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCATAATTTGCAAGAAAATCACCGGCAAATAATGGGCGAAGAATTATCAGGTTTGACAGTCAAAGAACTACAGAGTTTGGAGAACCAATTGGAAATCAGTCTTCGCGGTGTTCGTATAAAAAAGGAGCAACTTTTTATGGAAGAAATACAAGAACTAAATCGAAAGGGAGACATCATACACCAAGAAAATGTAGAACTGTATAAGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACAGATAGCCTAGGCATAGGAGACGATTCACACGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAAGTACACTACAAAGCACCTTCAGGAACTACAAAACTGGGACTACAATTGCATTGA 678 0.4071 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELGILCDAEVGVIIFSSTAKLYEFASSSMKSVIDRYNKSKEEHNQLGSPASEIKFWQREAAMLRQQLHNLQENHRQIMGEELSGLTVKELQSLENQLEISLRGVRIKKEQLFMEEIQELNRKGDIIHQENVELYKKVYGTKDKNGTNRNSVLTDSLGIGDDSHVPVNLQLSQPQQVHYKAPSGTTKLGLQLH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1353g00001 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vivi1353g00001 225 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1353g00001 225 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vivi1353g00001 225 MobiDBLite consensus disorder prediction 206 225 - -
Vivi1353g00001 225 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vivi1353g00001 225 Coils Coil 86 113 - -
Vivi1353g00001 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Vivi1353g00001 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1353g00001 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1353g00001 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1353g00001 225 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vivi1353g00001 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1353g00001 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1353g00001 225 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1353g00001 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1353g00001 1 214 MADS-box Gene Family AT4G37940 67.757 7.10e-101 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1353g00001 K-box 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1353g00001 K09264 - gmx:100812413 371.318