Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1351g00008 ATGGCTTTCAAGAATTTCTCCTATCTACTTTCCATGTTCTTGATCTTTGTTTCATTGTGTATAGCAAATGCTGTTCCACCAGAAACCATTTGCAACTCTATTGTAAACCCTACTTATTGTAAAACCGTTATCGGTAATCAAAATGGAAACATCTATGACTACGGTCGCATTTCTATTCAAAAATCGTTGTCACAATCTCATAAGTTCATCAACTTATTGGACTCATATCTTCAAGGTAGCTCGTCTTTGACTCAATCCACAATTCACGCTCTCGAAGATTGTCGATTCCTTGCTAGCCTAAGTTTTGAATACTTATCAAACACCTATGCCACAACAAATACATATAGTAATGTTCTTCCAACTTCTCAAGCAGAAGATTTCGAAACGTTTCTTAGTGCAGTTTTGACTAACCAACAAACATGTTTGGACGGTCTAGACACTATAGTTTCTTCTGATCACAGAGTGAAGAACGACTTATCGTTATCACTCTCTAATGAGAAAAAACTTAATAGTGTAACCCTAGCCTTGTTCTTGAAAGGTTGGATGCCAGAGAAAAAAATAAGAACATCATGGCCACAAAGCGGCAAACACTTGAATTTCAAAAATGGCCGGTTACCATTGAAGATGTCAAATAAAGCACACGCTATTTATGATTCAGCTAGACGCCATGGGCGAAAACTAGTTCAAACTCAAACAGATGAAAATAGTGTTGTGGTAAGTGATATTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTAGCACTATCAATGAAGCAATTGCTGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTTTCTCATTTTTATCACTGAAGGTGTGTATCAAGAGTATGTATCTATTGACAAAAAGAAGAAGTACTTGATGCTGGTTGGAGAAGGAATCAACAAAACAGTTATCACAGGAAATCACAATGTTGTTGATGGTTTCACAACATTCAATTCTGCCACATTTGCTGTGGTAGGTCAAGGGTTTGTGGGAGTTAATATAACATTTCGCAACACGGCTGGACCAGGAAAACATCAAGCAGTTGCAATGAGAAGTGGGGCTGACATGTCCACATTCTACCGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAACTGTAACATCTATCCTCGTCTTCCTCTTAATGGACAATTCAATACCATCACAGCGCAAGGTCGAACCGATCCAAATCAAAACACAGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCTAATGTTGGAACAGTTGAAACATATTTAGGGAGACCATGGAAGAATTATTCAAGGACGGTAGTTATGCAATCATCTATGGATAGTTTCATAAATCCTTCTGGTTGGCATATATGGGATGGTGATTTTGCATTGAGTACTTTGTATTATGCAGAATATGATAATAGAGGAGGTGGTTCAAGCACTGCAAATCGAGTCACATGGTCTGGTTATCATGTTATTGATGCTTCGGATGCAGCAAATTTCACAGTCTCTAATTGTTGA 1614 0.3773 MAFKNFSYLLSMFLIFVSLCIANAVPPETICNSIVNPTYCKTVIGNQNGNIYDYGRISIQKSLSQSHKFINLLDSYLQGSSSLTQSTIHALEDCRFLASLSFEYLSNTYATTNTYSNVLPTSQAEDFETFLSAVLTNQQTCLDGLDTIVSSDHRVKNDLSLSLSNEKKLNSVTLALFLKGWMPEKKIRTSWPQSGKHLNFKNGRLPLKMSNKAHAIYDSARRHGRKLVQTQTDENSVVVSDIVVVSQDGSGNFSTINEAIAAAPNNTVASDGYFLIFITEGVYQEYVSIDKKKKYLMLVGEGINKTVITGNHNVVDGFTTFNSATFAVVGQGFVGVNITFRNTAGPGKHQAVAMRSGADMSTFYRCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPNVGTVETYLGRPWKNYSRTVVMQSSMDSFINPSGWHIWDGDFALSTLYYAEYDNRGGGSSTANRVTWSGYHVIDASDAANFTVSNC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1351g00008 537 SUPERFAMILY Pectin lyase-like 238 536 IPR011050 -
Vivi1351g00008 537 CDD PMEI-like_3 29 181 - -
Vivi1351g00008 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Vivi1351g00008 537 FunFam Pectinesterase 28 179 - -
Vivi1351g00008 537 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Vivi1351g00008 537 FunFam Pectinesterase 236 537 - -
Vivi1351g00008 537 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Vivi1351g00008 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 177 IPR035513 -
Vivi1351g00008 537 Gene3D - 237 537 IPR012334 -
Vivi1351g00008 537 PANTHER PECTINESTERASE 17 536 - -
Vivi1351g00008 537 Pfam Pectinesterase 243 536 IPR000070 GO:0030599|GO:0042545
Vivi1351g00008 537 SMART PMEI_2 22 176 IPR006501 GO:0004857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1351g00008 8 536 Carbohydrate Esterase AT4G02330 57.847 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1351g00008 K01051 - gmx:100813051 798.505